Gene Rpal_5158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5158 
Symbol 
ID6412858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5556822 
End bp5558246 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content65% 
IMG OID642715048 
Productpeptidase C14 caspase catalytic subunit p20 
Protein accessionYP_001994121 
Protein GI192293516 
COG category[R] General function prediction only 
COG ID[COG4249] Uncharacterized protein containing caspase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.927175 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATCC ATCTCGGCCT GGTTGTGCTT GTATTTGCCG CGATGATCGT GGCGCCGCGC 
TCCTATGCGG CAGATAGTTC GGCGCCGCGG GTCGCGCTGG TGATCGGCAA CAGTAAATAT
CCGGATGCCG ACAAGCCGCT GAGTCAGTCG GTCAGTGATG CCCGCGAGCT CGCCGATGAC
CTGAAGCGCG CCGGCTTCGA TGCAGAGCTC GGCGAAGACC TGAGCGGCGA TGCGATGCGG
CGCGCGTTCG ACCGGCTGTA TCAGCGGACC AAGCCCGGCG CAGCCGCGCT GGTGTTCTTC
AGCGGCTTCG GCATCCAGTC GGGACGACAG AGCTATCTGA TCCCGATCGA TGCGCAGATC
TGGACAGAGC CTGACGTACG GCGCGACGGC ATCTCGCTCG AGACTGTTCT CAATGAGCTG
AATAGTCGCG GCGCATCGGT CAAGATCGCG CTGATCGACG CCTCCCGGCG CAATCCTTTC
GAGCGACGCT TCCGCAGTTT CTCCGCCGGC CTCGCACCGG TGATCGCGCC GAGCGGCTCG
CTGGTGATGT ATGCTGCTGC GCTGAGCGCC GTCGTCACCG ACAATGACAG CGCCCGTAGC
CCGTTCGTCA CGGCGTTGCG CGAGGAAATC CGCGCGGCCG GACGATCCGC CGAGGAGGCG
TTCAATCGCA CCCGGACCGC CGTCACCCGC GCCTCGCGCG GCGAGCAGGT GCCGTGGATC
TCGTCATCGC TCGCCGAGGA CTTTGTGTTC ACCCCCGGTG CCAAGGCAGA CAAGCCTGCC
GTCGCCGAGC CTGCGAAACA GCCCGCAGCC CCCGCCCCGG CGGAGAGCGC AAAACCACCG
ACGGCGCCGC CCGAAACCAA GCCGCCACAG GCCGCGGAAG CGAAGCCTTC CACCAGCCGT
GACGACGACA AACTGGTGCT GGCGCTCGCG AGCGATCCAA CGGTGAAATC GCTGACCGCT
CAGATTGCGG ACAAACCGTC CGACGGCAAT GCGTATTACC GGCGCGGTCA GGTCTATGCC
AGCAAGGGCG CGTACCGGTC GGCGATCAAG GACTTCGACG AAGCGATCCG GCTGAACGGC
AAGGATGTCG AAGCCTACAA CAACCGCTGC TGGGTCCGGA CCGTGATCGG CGAACTCGAG
CCCGCACTGG CCGACTGCGA TCAGGCGCTG CAGCTCCGGC CGAACTTCGT CGATGCGCTG
GATAGTCGCG GGCTGTTGCA TCTGAAGGGC GGCCGCGACA AGGCCGCGAT CGCCGATTTC
GACGCCGCGC TCAAGGTCAA TCCAAGGCTG ACGTCGTCGC TATACGGCCG CGGGCTGGCG
CGCAAACGGA TCGGGCTCGC CTCGGAAGGC GAGATCGACC TGACCACCGC CAAAAAGCTC
GATCCCAACA TCGGCAAGGA GTTCTCCGGC TACGGCGTGC AGTAG
 
Protein sequence
MKIHLGLVVL VFAAMIVAPR SYAADSSAPR VALVIGNSKY PDADKPLSQS VSDARELADD 
LKRAGFDAEL GEDLSGDAMR RAFDRLYQRT KPGAAALVFF SGFGIQSGRQ SYLIPIDAQI
WTEPDVRRDG ISLETVLNEL NSRGASVKIA LIDASRRNPF ERRFRSFSAG LAPVIAPSGS
LVMYAAALSA VVTDNDSARS PFVTALREEI RAAGRSAEEA FNRTRTAVTR ASRGEQVPWI
SSSLAEDFVF TPGAKADKPA VAEPAKQPAA PAPAESAKPP TAPPETKPPQ AAEAKPSTSR
DDDKLVLALA SDPTVKSLTA QIADKPSDGN AYYRRGQVYA SKGAYRSAIK DFDEAIRLNG
KDVEAYNNRC WVRTVIGELE PALADCDQAL QLRPNFVDAL DSRGLLHLKG GRDKAAIADF
DAALKVNPRL TSSLYGRGLA RKRIGLASEG EIDLTTAKKL DPNIGKEFSG YGVQ