Gene Rpal_5153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5153 
Symbol 
ID6412853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5551329 
End bp5552675 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content65% 
IMG OID642715043 
Producthomogentisate 1,2-dioxygenase 
Protein accessionYP_001994116 
Protein GI192293511 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3508] Homogentisate 1,2-dioxygenase 
TIGRFAM ID[TIGR01015] homogentisate 1,2-dioxygenase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.424959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATCA ATGCCGCTCC GCAGATCCTC GGCCGCAGCT CGCAGGACAT CACGCCCGGC 
TACATGTCCG GCTTCGGCAA TTCGTTCGAG ACCGAAGCGC TGCCCGGCGC ACTGCCGGTG
GGGCGCAACT CGCCGCAGCG CTGCGCCTAC GGCCTCTATG CCGAGCAATT GTCCGGCTCG
CCGTTCACGG CGCCGCGCGG TGCCAACGAG CGGAGCTGGC TGTATCGCAT TCGTCCCTCG
GTGAAGCACT CCGGCCGCTT CGCCAAGACC GACATGGGGC TGTGGCGCTC GGCGCCGTGC
TTCGAGCACG ATCTGCCGAT CGCGCAACTG CGCTGGGATC CGCCGCCGAT GCCGCAGGAG
AAGCTGACCT TCCTGCAAGG CGTGCGGACG ATGACGACGG CCGGCGACGT CAACACCCAG
GCCGGGATGG CGACGCATCT GTATCTGATC ACCCAGTCGA TGGTGGATCA GCACTTCTAC
AATGCCGACG GCGAGATGAT GTTCGTGCCG CAGCAGGGCA GCCTGCGCCT CGTCACCGAG
TTCGGCATCA TCACCATCGA GCCGGCCGAG ATCGCGGTGA TCCCGCGCGG CATCAAGTTT
CGGGTCGAAC TGGTCGACGG CCCGGCGCGC GGCTATCTGT GCGAAAACTA CGGCGGCGCC
TTCACGCTGC CGGAGCGCGG CCCGATCGGC GCCAACTGCC TCGCCAATTC GCGCGACTTC
CTCACCCCGG TCGCCGCCTA CGAGGACAAG GACACGCCGA CCGAGCTTTA TGTGAAGTGG
GGCGGCTCGC TGTACGTGAC CAAGCTGCCG CACTCTCCGA TCGACGTCGT TGCCTGGCAC
GGCAACTACG CGCCGTACAA ATACGACCTG CGCACCTATT CGCCGGTCGG CGCGATCGGC
TTCGATCATC CCGATCCGTC GATCTTCACC GTGCTGACCT CGCCGTCGGA GACGCCCGGC
ACCGCCAATA TCGACTTCGT GATCTTCCCC GAGCGCTGGA TGGTGGCGGA CAACACGTTC
CGGCCGCCGT GGTATCACAT GAACATCATG TCGGAGTTCA TGGGCCTGAT CTACGGCGTG
TACGACGCCA AGCCGCAGGG CTTTGTGCCG GGCGGCGCCT CGCTGCACAA CATGATGCTG
CCGCACGGCC CCGATCGCGA AGCATTCGAT CATGCCAGCA ACGGCGAGCT GAAGCCGGTG
AAGCTGACCG GCACGATGGC GTTCATGTTC GAGACCCGCT ACCCGCAGCG TGTCACCGAA
TATGCCGCGA GCTCCGGCCT GTTGCAGGAC GATTACGCGG ACTGCTGGAA CGGCCTCGAA
AAGCGCTTCG ATCCAAACCG GCCATGA
 
Protein sequence
MNINAAPQIL GRSSQDITPG YMSGFGNSFE TEALPGALPV GRNSPQRCAY GLYAEQLSGS 
PFTAPRGANE RSWLYRIRPS VKHSGRFAKT DMGLWRSAPC FEHDLPIAQL RWDPPPMPQE
KLTFLQGVRT MTTAGDVNTQ AGMATHLYLI TQSMVDQHFY NADGEMMFVP QQGSLRLVTE
FGIITIEPAE IAVIPRGIKF RVELVDGPAR GYLCENYGGA FTLPERGPIG ANCLANSRDF
LTPVAAYEDK DTPTELYVKW GGSLYVTKLP HSPIDVVAWH GNYAPYKYDL RTYSPVGAIG
FDHPDPSIFT VLTSPSETPG TANIDFVIFP ERWMVADNTF RPPWYHMNIM SEFMGLIYGV
YDAKPQGFVP GGASLHNMML PHGPDREAFD HASNGELKPV KLTGTMAFMF ETRYPQRVTE
YAASSGLLQD DYADCWNGLE KRFDPNRP