| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5142 |
|---|
| Symbol | |
|---|
| ID | 6412842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5536156 |
|---|
| End bp | 5536953 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642715032 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IIB |
|---|
| Protein accession | YP_001994105 |
|---|
| Protein GI | 192293500 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1877] Trehalose-6-phosphatase |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCA AACTCGTTCG ACCATCTGAT CAGGCGACCT CAAATCAGGT TCCGGTCCCC
GGCGCGCTGG TGCCGCATCT CGATCAGTGT GCGCTGCTGC TGGACATCGA TGGTACGTTG
TTGGACCTGG CGCCGACCCC GCGCGAAGTC TGGGTGCCGC CGGAGCTGGA ACAAACGCTG
ACCAATCTTC TGGTCAGGAC GTCCGGTGCG CTGGCGCTCG TCAGCGGGCG TTCGATCAAC
GACATCGATC TGATTTTCGC GCCGATGCGA TTGCCCGCCG TCGGTGGTCA TGGCGCCGAG
ATACGGCTGT CGGGCGAGGG CGAAGCGATC GCGACGCACG CGCCGCCGCT CGATTCCGAG
CTGAAGAGCC GGCTCGCCGC AATTGCTCGC ATCAGCCCCG GTATTTTGTT GGAGGACAAA
GGCTACTCAT TGGCACTGCA CTATCGTCTG GCGCCGCACA CTGAAAAAGC GATCTACGAA
GCGGTTGCGG CGATCCGCGC GGAGAATCCG GAAGCGCCGC TGGAAGTCCT GCCCGGGAAA
TCCGTGTGCG AGATCAAGCA TTCGGGTTTC ACCAAGGCGA CAGGCGTGCG GGAACTGATG
ACTCGCGCAC CGTTCAAAGG CCGGCGTCCG ATCTTCATCG GCGACGACGT TACTGACGAA
ACGGTGTTCG CCATCATGCC GGAACTTCGA GGCCTCGCAT TCTCGGTTGG GCGCTATAGC
GAACTGACCT CCGGACACTT CGACGAGCCG CGCGATGTGC GCAACTGGCT CGCACGTTTA
CTCGAACCAG CCAATTAG
|
|---|
| Protein sequence | MTTKLVRPSD QATSNQVPVP GALVPHLDQC ALLLDIDGTL LDLAPTPREV WVPPELEQTL
TNLLVRTSGA LALVSGRSIN DIDLIFAPMR LPAVGGHGAE IRLSGEGEAI ATHAPPLDSE
LKSRLAAIAR ISPGILLEDK GYSLALHYRL APHTEKAIYE AVAAIRAENP EAPLEVLPGK
SVCEIKHSGF TKATGVRELM TRAPFKGRRP IFIGDDVTDE TVFAIMPELR GLAFSVGRYS
ELTSGHFDEP RDVRNWLARL LEPAN
|
|---|
| |