| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5141 |
|---|
| Symbol | |
|---|
| ID | 6412841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5534515 |
|---|
| End bp | 5535999 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642715031 |
|---|
| Product | alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
|---|
| Protein accession | YP_001994104 |
|---|
| Protein GI | 192293499 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGG TCGTGGTTTC GAACCGAGTT GCCCGAGCGT CGGGGAACGA ACCGATGACG
GGAGGGCTGG CAGCCGCGTT GCTGCCAGTG GTGGAAAAAT CCGGGGCGAT ATGGGTCGGC
TCGAGCGGTC GCGTCCGTGA TGGCGTTCAC CGCGAGCCGT TCGCTGAAAT CGAACCGCTC
GGCGCTGGCG CTCTCGCCAT GCTGGATCTG CCCGCCGCAC ATTACGGCGG TTACTACGAG
GGCTTCGCCA ATTCGGCGCT ATGGCCTGCG CTGCATTCCC GCCCGGATCT GATCCGGGTG
TCGCACGACG ATTATCGCTC CTATCGCGAA GTCAACGCCT TCATGGCGCG CGCGCTGCTG
CGGTTCCGCA AGCCGGATAC CGCGTTTTGG ATTCAGGATT ATCACTTCCT CGCTTTGGGC
GCGGAACTGC GCCAGCTCGG CGTCCAGCAT CCGATCGGGT TCTTCCTGCA TACGCCATGG
CCGTCGCGGG CGACGATTGG ATGCGTACCC CATCACCGCG AACTGATCGA AGCGATGCTG
ACCTATGATC TGATCGGGTT CCAGACCGAA GAGGATCGCC GCAATTTCCT CGGTTACGTC
GAATCGGAAC TCGGCCTGAA GATCGACGGC AGCGAGGTCT CGACCACGCA CGGCACCGCG
CGCTGCGAGG TGTTCGCAAT CAGCATCGAC GCCGACGCAT TCGCCCAACA AGCACAGAAG
GCGATGACCC ACCCCGAAGT CTCCCGCCTC CGCAAGAGTC TGAACGGCGA AAAGCTCGTA
ATTGGCGTCG ATCGTCTCGA TTACTCGAAG GGGCTGATCA ACCGCGTCAA GGCGTTCGAC
AAGATGTTGA CCGACCGGCC GGCCTTGCAG CGGGTGGTGT CGCTGCTGCA AATCGCGACC
CCGTCCCGCG GCACGATCGA GGCCTACGGC AATCTGCAGG GCGATCTCGC CAAGCTGGTC
AGCGACGTCA ACGGCCGGCT CGGCGAGGTC GACTGGACCC CGATCCGCTA TCTCAACAAG
GGGTATCGCC AGAGTGTGCT CGCGGGCCTG TACCGCTCGG CTCATGTCGG GTTGGTCACA
CCGCTGCAGG ACGGCATGAA CCTGGTGGCC AAGGAATACG TTGCGGCTCA GAACCCGCTC
GATCCCGGCG TCCTGGTGCT GTCGAAATTC GCCGGGGCCG CCAATGAGCT CGACACCGCC
CTGCAGGTCA ATCCGCACGA CATCGAGGGC ATGTCGCGAG TGATAGCCAC CGCGCTGGCG
ATGCCGCTGA CAGAGCGGCG GCTGCGATGG GAGGCGATGA TGGCCAAGCT GCGTGACAAC
AGCATCCGCC GCTGGTTCGC GGACTTCCTC GCCGCGCTGG ATCAAGCCCA CACCGCCAAT
CGCAGTGTCG GTCCGATCCC GCTGGCGCCG CCGCCCTCCA TCATGATGGC GGGGGGGCGG
TCACGGCTCG CGCCGCGCGC TGCTGGTGGC GCAGTGCTGC AATAG
|
|---|
| Protein sequence | MNLVVVSNRV ARASGNEPMT GGLAAALLPV VEKSGAIWVG SSGRVRDGVH REPFAEIEPL
GAGALAMLDL PAAHYGGYYE GFANSALWPA LHSRPDLIRV SHDDYRSYRE VNAFMARALL
RFRKPDTAFW IQDYHFLALG AELRQLGVQH PIGFFLHTPW PSRATIGCVP HHRELIEAML
TYDLIGFQTE EDRRNFLGYV ESELGLKIDG SEVSTTHGTA RCEVFAISID ADAFAQQAQK
AMTHPEVSRL RKSLNGEKLV IGVDRLDYSK GLINRVKAFD KMLTDRPALQ RVVSLLQIAT
PSRGTIEAYG NLQGDLAKLV SDVNGRLGEV DWTPIRYLNK GYRQSVLAGL YRSAHVGLVT
PLQDGMNLVA KEYVAAQNPL DPGVLVLSKF AGAANELDTA LQVNPHDIEG MSRVIATALA
MPLTERRLRW EAMMAKLRDN SIRRWFADFL AALDQAHTAN RSVGPIPLAP PPSIMMAGGR
SRLAPRAAGG AVLQ
|
|---|
| |