| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5124 |
|---|
| Symbol | |
|---|
| ID | 6412818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5508675 |
|---|
| End bp | 5510690 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642715009 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001994088 |
|---|
| Protein GI | 192293483 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGTTC CCGCACGCGA CATCCACGAC AAGGTCACGC ATCGCGACAT GGCGAATGCG
ATCCGCTTTC TCGCTATCGA CGGTGTCGAG AAGGCGAAGT CCGGCCACCC GGGCATGCCG
ATGGGCATGG CCGACGTTGC CACCGTGCTG TTCACCCGCT TCCTGAAGTT CGATCCGGCC
GATCCGGCCT GGGCCGACCG CGACCGGTTC GTGCTGTCGG CCGGCCACGG CTCGATGCTG
CTGTACGCGC TGCTGCATCT GACCGGCTAT CCGGAAGTGA CGATCGATCA GCTGAAGTCG
TTCCGGCAGT GGGGTTCGAA GACCCCGGGC CATCCGGAAT ACGGCCACAC CCAGGGCGTC
GAGACCACCA CCGGCCCGCT CGGCCAGGGG CTTGCGACCT CGGTCGGCAT GGCGCTCGCC
GAACGCATGA TGAATGCTCG CTACGGCGAC GCACTGGTCG ATCACCACAC CTACGTCATC
GCCGGCGACG GCTGTCTGAT GGAAGGCGTC AGCCACGAGG CGATCTCGCT GGCCGGGCAC
CTCAAGCTCA ACAAGCTGAT CGTGCTGTGG GACGACAACC ACATCTCGAT CGACGGCGAC
ACCTCGCTGT CGTGCTCGGA CGATCAGCTC GCGCGCTTCG CCGCGTCGGG CTGGGCCACC
ACCCGCGTCG ACGGTCATGA TCCGGAAGCG GTCGCGGCCG CGATCGAGCA GGCCAAGAAC
AGCGACCGTC CGTCGCTGAT CGCCTGCCGC ACCACGATCG GCTTCGGCTC GCCGAAGGTG
GCGGGCACCG AGAAGGCGCA CGGCGCCCCG CTCGGCGCCG ACGAGGTCGA GAAGACCCGC
GCCGCGCTGA ACTGGCCGTA TCCGCCGTTC GAAATCCCCG ATCCGATCCT GGCGCGCTGG
CGCGAGGCCG GCGGCCGCGG CAAGGCGGCG CACCAGGCCT GGACCCAGCG GCTGGCGGCG
GCCGATGCTG CGACCCGCAC CGGCTTCACC GATGCGCTCG CCGGCAAGCT GTCGGCGGAC
TACGAAGGCG CGCTGCAGGG CCTGATCGCC AAGTTCGACG CCGACAAGCC GACCATCGCC
ACCCGTCAGG CGTCGCAGCT CACCATCGAC GCCATCGTGC CGGCGTCGCC GAACATCCTC
GGCGGCTCGG CCGACCTGAC GCACTCCAAC CTGACGCATG CCAAGGGCAC CGCGTCGGTG
AAGCCGGGCG CGTTCGGCGG GTCCTACCTG CACTACGGCA TCCGCGAATT CGGCATGGCG
GCGGCGATGA ACGGCATCGC GCTGCACGGC GGCTTCGTGC CGTTCGGCGG CACCTTCCTG
GTGTTCGCCG ACTACAGCCG TCCGGCGATC CGCCTCGCGG CGCTGATGGG CGTGCGCGTC
ATCCATGTGA TGACCCACGA CTCGATCGGC CTCGGCGAAG ACGGCCCGAC CCATCAGCCG
GTCGAGCACG TCGCCTCGCT GCGCGCGATC CCGAACGTCC TGGTGTTCCG CCCGGCCGAC
GCGATTGAAA CCGCGCAGGC CTGGGACTGT GCGCTGAAGC AGACCTCGCG TCCGTCGGTG
CTGGCGCTGT CGCGTCAGGG CCTGCCGGCG CTGCCGCGTC CGAACGGCGC GACCGGCAAC
CCGGTGGCGC GCGGCGCTTA TGTCGTGGTC GATCCCGGCC AGCGCGACGT CACCCTGATC
GCCACCGGCT CGGAAGTGTC GCTGGCGCTG GATGCGGCGT CCAAGCTGGA AGCCGAAGGC
ATCAAGGCGG CGGTGGTGTC GGCCCCGTGC TTCGAACTGT TCGCCGACCA GGACGACGCG
TACCGCGCCA GCGTGCTCGG CACCGCGCCG CGGATCGGCA TCGAGGCGGC CCGCGACACC
GACTGGCGCC GCTGGATCGG TGATACCGGC GCGTTCGTCG GCATGACCGG GTTCGGTGCC
TCGGCGCCGG CGCCGATCCT GTACCAGAAG TTCGGCATCA CCGCGGACGC GGTGGTGGAC
GCCGCCAAGG GCGCGATCGC CCGCGGTAAG CACTGA
|
|---|
| Protein sequence | MNVPARDIHD KVTHRDMANA IRFLAIDGVE KAKSGHPGMP MGMADVATVL FTRFLKFDPA
DPAWADRDRF VLSAGHGSML LYALLHLTGY PEVTIDQLKS FRQWGSKTPG HPEYGHTQGV
ETTTGPLGQG LATSVGMALA ERMMNARYGD ALVDHHTYVI AGDGCLMEGV SHEAISLAGH
LKLNKLIVLW DDNHISIDGD TSLSCSDDQL ARFAASGWAT TRVDGHDPEA VAAAIEQAKN
SDRPSLIACR TTIGFGSPKV AGTEKAHGAP LGADEVEKTR AALNWPYPPF EIPDPILARW
REAGGRGKAA HQAWTQRLAA ADAATRTGFT DALAGKLSAD YEGALQGLIA KFDADKPTIA
TRQASQLTID AIVPASPNIL GGSADLTHSN LTHAKGTASV KPGAFGGSYL HYGIREFGMA
AAMNGIALHG GFVPFGGTFL VFADYSRPAI RLAALMGVRV IHVMTHDSIG LGEDGPTHQP
VEHVASLRAI PNVLVFRPAD AIETAQAWDC ALKQTSRPSV LALSRQGLPA LPRPNGATGN
PVARGAYVVV DPGQRDVTLI ATGSEVSLAL DAASKLEAEG IKAAVVSAPC FELFADQDDA
YRASVLGTAP RIGIEAARDT DWRRWIGDTG AFVGMTGFGA SAPAPILYQK FGITADAVVD
AAKGAIARGK H
|
|---|
| |