| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5113 |
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| Symbol | |
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| ID | 6412807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5494304 |
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| End bp | 5496058 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714998 |
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| Product | transcriptional regulator, NifA, Fis Family |
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| Protein accession | YP_001994077 |
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| Protein GI | 192293472 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGC GCGAAATTCG CCTTGTCGAT AACGAGTACC CGTCGCCTTC GATGACCCAT
CCTCCGATAC CGCTGAGTGA CATCGCGCTC ACCGGCATTT TCGAGATCTC GAAAATCCTC
ACCTCACCGG CGCGGTTGGA GATCACCCTC GCCAACGTCG TCAACCTGCT GCAGTCATTT
TTGCAGATGC GCAACGGCGT GGTGTCGCTG CTCGCCGATG ACGGCGTGCC CGATATTACC
GTCGGGGTCG GCTGGAATGA GGGGAGCGAT AACCGCTATC GCGCCCGGCT GCCGCAGAAG
GCGATCGACC AGATCGTCGC GACCGCGGTG CCGCTGGTCG CCGACAACGT CTCTGCCCAT
CCGATGTTCA CCGCCGCCGA TGCCATGGCG CTCGGCGCCA CCGACGAAAT CCGGGTGTCG
TTCATCGGCG TGCCGATCCG GATCGACTCA CGGGTGGTCG GCACGCTAAG CATCGACCGC
GTCCGCGATG GCCGTTCGCA CTTCCGGATG GACGCCGACG TGCGCTTCCT CACCATGGTG
GCCAATCTGA TCGGCCAAAC CGTGAAGCTG CACCGCGTCG TCGCGCGCGA CCGCGAGCGG
CTGATGGCAG AAAGCCACCG GTTGCAGAAG GAGCTGTCCG AGCTGAAGCC GGAGCGCGAG
CGCAAGCGGG TCAAGGTCGA CGGCATCGTC GGCGAGAGCC CGGCGATCCG CAAACTGCTG
GCCAAGGTCA GCATCATCGC CAAGTCGCAG TCGCCCGTGT TGCTGCGCGG CGAGTCGGGA
ACCGGCAAGG AGCTGATCGC AAAAGCGATC CACGAATTGT CGGCGCGCGC CAACGGCCCG
TTCATCAAGA TCAACTGCGC GGCGCTGCCG GAATCGGTGC TGGAGTCCGA GCTGTTCGGG
CACGAGAAGG GCGCGTTCAC CGGCGCGATC GCCTCGCGCA AGGGCCGGTT CGAGCTGGCC
GACAAGGGCA CGCTGTTCCT CGACGAGATC GGTGAGATCT CCGCGTCGTT CCAGGCCAAG
CTGCTGCGCG TCTTGCAGGA GCAGGAATTC GAACGGGTCG GCGGCAACCA GACCATCAAG
GTCAATGTCC GGATCGTCGC CGCGACCAAC CGCAATCTGG AAGAGGCAGT GGCGCGCAAG
GAATTCCGCG CCGATCTGTA TTACCGCATC AATGTAGTGC CGATGATCCT GCCGCCGCTG
CGCGACCGGC CCAGCGACAT CCCGCTGCTG GCGAGCGAAT TCCTGAAGAA CTTCAACAAG
GAGAACGGCC GCGAGCTGGC CTTCGAGTCG CACGCGCTGG ATCTGCTGAA GGCCTGCTCG
TTCCCCGGCA ACGTCCGCGA GCTGGAGAAC TGCGTGCGCC GCACCGCCAC CCTGGCGATG
GGGCCGGAAA TCCGCGACAG CGATTTCGCC TGTCACCAGG ACGAATGCCT GTCGGCGATC
CTGTGGAAGG GGCACGCCGA ACCTGCGCCC GAGCGCCCAC GCCCTGAGAT CCCGTTGCAG
GTCCTGCCGC GCAAGGCACC GGTGGAAATC GTCCATCCGC GCGAGCCGGT CGCATCCGCG
GATGATTTTG CGCCGGCGCC GGTTCGTTCC GAGATGCCAT CCGACGAATC GAACATGTCG
GAGCGCGAGC GGCTGATCAA CGCCATGGAG CGAGCCGGGT GGGTGCAGGC GAAGGCCGCA
CGCATTCTCG GCCTCACGCC GCGCCAGATC GGCTACGCGC TGAAGAAGCA CAACATCGAG
CTCAAGCACT TCTGA
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| Protein sequence | MAQREIRLVD NEYPSPSMTH PPIPLSDIAL TGIFEISKIL TSPARLEITL ANVVNLLQSF
LQMRNGVVSL LADDGVPDIT VGVGWNEGSD NRYRARLPQK AIDQIVATAV PLVADNVSAH
PMFTAADAMA LGATDEIRVS FIGVPIRIDS RVVGTLSIDR VRDGRSHFRM DADVRFLTMV
ANLIGQTVKL HRVVARDRER LMAESHRLQK ELSELKPERE RKRVKVDGIV GESPAIRKLL
AKVSIIAKSQ SPVLLRGESG TGKELIAKAI HELSARANGP FIKINCAALP ESVLESELFG
HEKGAFTGAI ASRKGRFELA DKGTLFLDEI GEISASFQAK LLRVLQEQEF ERVGGNQTIK
VNVRIVAATN RNLEEAVARK EFRADLYYRI NVVPMILPPL RDRPSDIPLL ASEFLKNFNK
ENGRELAFES HALDLLKACS FPGNVRELEN CVRRTATLAM GPEIRDSDFA CHQDECLSAI
LWKGHAEPAP ERPRPEIPLQ VLPRKAPVEI VHPREPVASA DDFAPAPVRS EMPSDESNMS
ERERLINAME RAGWVQAKAA RILGLTPRQI GYALKKHNIE LKHF
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