| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5088 |
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| Symbol | |
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| ID | 6412782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5474407 |
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| End bp | 5475600 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714973 |
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| Product | homocitrate synthase |
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| Protein accession | YP_001994052 |
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| Protein GI | 192293447 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAGA TCAAGTCTGA GATCGTCCGG CCGGATCAGT CCTGCGGTTT CCAGTCCGCC
CCAATCGTGC TCAACGACAC CACATTGCGC GATGGTGAGC AGGCGCCGGG TGTTGCCTTC
TCCACCGCCG AGAAGGTTGC GATCGCCCGA GCGCTGGCGC GCGCCGGCGT GCCGGAAATC
GAGGCGGGGA CGCCCGCGAT GGGCGTCGAT GAGATCGCGG CGATCCGCGC CATCGTCGAA
GCCGGCCTGC CGCTGACCAC GATTGCCTGG TGCCGGATGC GCACCGAAGA CGTCGATGCC
GCGCTGAAGG CCGGTGTGGC GATGGTCAAT GTCTCGGTGC CGGTGTCGGA CGTGCAGATC
GCTGCCAAGC TCGGCGGCAA GCGGTCGAAT GCGATCGAGA CCGTCAAGCG CGTGGTCGGC
TATGCCCGGG ACCGCGGCCT CGACGTCGCC GTCGGCGGTG AGGATTCCTC GCGAGCCGAT
CCCGAATTCC TCGCCGAGGT GATCGCCACC GCAAAGGCAT CCGGCGCGCG CCGGTTTCGG
ATCGCCGATA CGCTGAGTGT GCTCGACCCA TTCTCCAGCC ATGCGCTGCT GGCGACGCTT
CGCGCCTCGA CGGACCTCGA GCTCGAATTC CACGGCCATG ACGATCTCGG CCTCGCCACC
GCCAACACGC TGGCCGCGCT CCGCGCCGGT GCCACCCATG CCTCGGTGAC AGTGATCGGC
CTCGGCGAAC GGGCCGGCAA TGCGCCGCTT GAAGAGGTCG CGGTGGCGCT GAAGCAGCTC
TATGGCCGCG ACACCGGCAT CGTGCTGTCG GAGCTCGGCA ACGTCGCCGA TCTCGTTGCC
ACCGCAGCCG CCCGTACCAT TCCGCTCAAC AAGGCGATCG TCGGTGAGCA CGTCTTCACC
CATGAATCGG GAATACATGT CGATGGCCTG CTCAAGGATC AGCGCACCTA CCAGTCGCTC
GATCCGAACT TGTTCGGCCG CTCCAACCGC ATTGTCATCG GCAAGCACTC CGGGCTATCG
GCGATCACCT CGTCGCTCGC CAAGTTGGAT CTGCCGGCGA CCGCGGACGA GGCGCAGGGT
ATCCTGGCCA AGGTCCGCCA CTATGCAGTC ACCCACAAGG GCCCGGTCGG CAACGAGACA
TTGATTGCGA TTTGGCGCGA GGTCCGCGAG CGGACGCTCA CCAACTGCGC CTGA
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| Protein sequence | MSEIKSEIVR PDQSCGFQSA PIVLNDTTLR DGEQAPGVAF STAEKVAIAR ALARAGVPEI
EAGTPAMGVD EIAAIRAIVE AGLPLTTIAW CRMRTEDVDA ALKAGVAMVN VSVPVSDVQI
AAKLGGKRSN AIETVKRVVG YARDRGLDVA VGGEDSSRAD PEFLAEVIAT AKASGARRFR
IADTLSVLDP FSSHALLATL RASTDLELEF HGHDDLGLAT ANTLAALRAG ATHASVTVIG
LGERAGNAPL EEVAVALKQL YGRDTGIVLS ELGNVADLVA TAAARTIPLN KAIVGEHVFT
HESGIHVDGL LKDQRTYQSL DPNLFGRSNR IVIGKHSGLS AITSSLAKLD LPATADEAQG
ILAKVRHYAV THKGPVGNET LIAIWREVRE RTLTNCA
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