| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5034 |
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| Symbol | |
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| ID | 6412728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5416157 |
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| End bp | 5417446 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714919 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001993998 |
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| Protein GI | 192293393 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC TGATCGTTCT CGGCCTGCTG TTCGTCCTGC TCGCCATCGG CACGCCGGTC
GGCTTTGCGA TGGCCTTCTC CGGCTCGGTC GGCCTGCTGA TGGTCGGCGG CATCGGCACG
TTGTTCGGCA TCCTGGAGAC TGCGCCGCTG TCGACGGTGT CGTCCTACGA GCTGATCACC
ATCCCGATGT TCCTGCTGAT GGCCGAACTG GTGCTGTTGT CCGGTGTCGC CGACGCTTTG
TTCAAGACCG CCTCGGCCTG GGTCGGCCGT ATCCCCGGCG GCCTCGGCAT GGCGACCGCG
CTCGCCGGCG CCGGCTTCGG CGCGATCTGC GGCACCAGCA CGGCATCGGC GGCGACGCTC
TCCTCGACCA GCCTGCCGGC GATGATCAAG CAGGGCTACG AGCCGAAGAT GGCGGCCGGC
GTGGTGGCGA TCTCCGGCAC GTTGGCGATG CTGATCCCGC CCAGCGTGGC GTTGGTGATC
TTCGGCCTGC TCGCCGAAGT GAATATCGGC CAGCTCTTGA TCGGCGGGAT CATTCCCGCT
GCGCTGGTCA CCGCGACCAT CATGGCGACG ATCTACATCC TGGTCTGGCT CGATCCGTCA
CGCGCGCCTC GGGTCGCGTC GGTGCCGTGG CGCGAGCGTT TCGTGCTGCT GTGGCAGATC
GGCCCGATGC TGGCGCTGTT CTCGCTGGTC ACCGGCACCA TCTATCTCGG AGTCGCGACC
CCGACCGAAG CTTCGGCCCT CGGTGCCGCG GGCGCGCTCG TGCTGGCGAT CTCCAAGGGT
AAAGTGACCC CGAGGACGCT GTACAAGGCG CTGCTCAGCG CCAGCTACGG CACCTGCATG
ATCGTGACGA TCCTGGTCGG TGCCTCGATC TTTGGGTACT TCTTCACGCT CACCCACGTC
ACCCAGGACC TCGTCGCCTG GGTCGGATCG CTGGAGACCT CGCGCTGGGT GATCATCACG
CTGATCCTGT GCGGCTACAT CGTGCTCGGC TCGTTCATGG ACCAGATCGC CATCCTGGTG
CTGACGGTGC CGATCGTGAT GCCGCTGATC AAGTCGCTCG GCTTTGATCC GATCTGGTTC
GGCGTCATCA AGATCGTCAC CGCCGAAGTC GGCATGATCA CGCCGCCGGT CGGTCTGAAC
TGCTTCATCG TCGCGCGCTA CGCCAAGCGG CCGGTCGCTG AAGTGTTTCA CGGCACCTTC
CCGCACTTCA TCGCGCACCT GATCGCGATC GCCATCATGG TGGCGTTCCC GAGCATCATC
CTGTGGCTGC CGTCGCAGAT GGCGCCGTAA
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| Protein sequence | MTTLIVLGLL FVLLAIGTPV GFAMAFSGSV GLLMVGGIGT LFGILETAPL STVSSYELIT
IPMFLLMAEL VLLSGVADAL FKTASAWVGR IPGGLGMATA LAGAGFGAIC GTSTASAATL
SSTSLPAMIK QGYEPKMAAG VVAISGTLAM LIPPSVALVI FGLLAEVNIG QLLIGGIIPA
ALVTATIMAT IYILVWLDPS RAPRVASVPW RERFVLLWQI GPMLALFSLV TGTIYLGVAT
PTEASALGAA GALVLAISKG KVTPRTLYKA LLSASYGTCM IVTILVGASI FGYFFTLTHV
TQDLVAWVGS LETSRWVIIT LILCGYIVLG SFMDQIAILV LTVPIVMPLI KSLGFDPIWF
GVIKIVTAEV GMITPPVGLN CFIVARYAKR PVAEVFHGTF PHFIAHLIAI AIMVAFPSII
LWLPSQMAP
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