| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5020 |
|---|
| Symbol | |
|---|
| ID | 6412713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5403676 |
|---|
| End bp | 5404143 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642714904 |
|---|
| Product | protein tyrosine phosphatase |
|---|
| Protein accession | YP_001993984 |
|---|
| Protein GI | 192293379 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCGC CGTCGCGGAC CGGCCTGCCG CACGCGGTGC TGTTCGCCTG CGGCATGAAC
AGCGTGCGCT CGCCGATGGC CGAGGCGATG CTGCGCGGCA TCGCGCCGCG TACGATGTAT
GTGCGCTCCG CCGGGGTGAA GACCCAGGAG CTCGATCCGT TCGCGGTGGC GGTGATGGCC
GAGCGCGGCC TCGACATCTC CAAGCACAAG CCGACCACCT TCGAAGAGCT CGACGATTAC
GAGGGCCTGA ACTTCGACCT GATCGTCACG CTGTCGCCGG AGGCGCACCA CAAGGCGCTG
GAGCTGACCC GCGCCCACGC GGTCGACGTC GAATACTGGC CGACCTACGA TCCGACGGGC
ACCGAAGGCA ACCGCGAGCA GAAGCTTGCC GCCTACCGCG AAGTCGCCGA CTCCCTGATG
CAGCGCATCT ACAAACGCTT CGGCCGCCAC AGCAGCGGGA ACGAGTAG
|
|---|
| Protein sequence | MIPPSRTGLP HAVLFACGMN SVRSPMAEAM LRGIAPRTMY VRSAGVKTQE LDPFAVAVMA
ERGLDISKHK PTTFEELDDY EGLNFDLIVT LSPEAHHKAL ELTRAHAVDV EYWPTYDPTG
TEGNREQKLA AYREVADSLM QRIYKRFGRH SSGNE
|
|---|
| |