| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5001 |
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| Symbol | |
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| ID | 6412693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5384028 |
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| End bp | 5386148 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714884 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001993965 |
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| Protein GI | 192293360 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.140245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAAGC CTGAGGTTGC GGTCGAGCCG ACGCCGGCGC CGGTCCATGT CGAGTTCGAC
AATTTCGAGC ACGGCTTCCC GGCCGGCTTC GGGCCGCGGG GGTGGCGCTA TCTGGCCTAT
GCGGTGGCGA TCGCGTTTGC CAGCTTCCAG CTCGTCATCG CGGCCTGGAA CGTGCTGCCG
AGCCAGGTGG TGCGCGGCGT CCATGTCGGC TTCCTGCTGC TGCTGACCTT CGGGCTGATC
GGTAATTTCA CCGCGCGCAC CGATTTCGGC CGTGCGATCG CCTGGCTGAC CGGCGCGGTC
GGGTTCTTCT GCGGCCTTTA TCAGTGGATC TTCTACGCCG ACCTGATCCA GCGTGACGGC
GACCCGACCC ACCTCGATCT CGCGGTCGGC ACGCTGCTGG CGGTGCTGAT CTTCGAGGGC
ACGCGGCGGC TGATGGGGCC GGCGCTGCCG ATCATGTGCG GCGTGTGCCT GCTGTACTGG
TTCTTCGGCC AGTATCTGCC GGCGCCGTTC AACCATCGCG GCTATGATTT CGACCAGGTC
ATCACCCACC TGTCGTTCGG CACCGAGGGC TTCTACGGCG TGCCGATCTA CGTGTCGGCG
ACATACATCT TCCTGTTCAT CCTGTTCGGT TCGTTCCTGG AACGCGCCGG GATGATCCAG
CTGTTCACCG ACGTGTCGCT CGGCCTGTTC GGCCGCAGCC GCGGCGGTCC GGCCAAGGTG
GCGGTGTTCG CCTCGGGCAT GATGGGCACG ATCTCCGGCT CCGGTGTCGC CAACGTGGTC
ACTGTCGGCC AGTTCACCAT TCCGCTGATG ATCAAGTTCG GCTACCGACG CGCCTTCGCG
GCGGGCGTTG AAGCCACCGC CTCGATGGGC GGCCAGATCA TGCCGCCGGT GATGGGCGCT
GTCGCGTTCA TCATGGCCGA GACGCTCGGC GTCGACTACG CGGTGATCGT CAAGGCCGCC
GTGATCCCGG CGATCCTGTA TTTCGCCTCC GCGTTCTGGA TGGTGCATCT CGAAGCCGGC
AAGCATGGCC TGGTCGGGAT GAAGAAGTCC GAGATCCCGA GCGCATGGCG CGCCGCGGTC
GATCGCTGGT ACTTGATCCT GCCGCTGGCG GCACTGGTGT TCATGCTGTT CGAGGGCTTC
ACGCCGCTCT ACGCCGGCTC GATGGGCCTG GCGTTGACGG TGGCGCTGAT CCTCGGCGCG
TCGATCGTGC ACGGATTCTC CAACACCGTG CTGCGCTACG TGTTCTGGAT CGGGCTGGCG
CTGGTGGTCG GCGCGGCGTC GCATAACGGC CTCGACATCA TGCGGATCGT GGTGATCGTC
GCCGCGCTGG TGGCGATCGC CGCGATCACC CGCGGCGGAC GTGCCACGCT GCGCGCCTGC
CGGGATTCGC TCGCCGACAG CGCCAAGTCT GCGCTCACCG TCGGCATGGC CTGCGCGATC
GTCGGCACCA TCATCGGCAT GATGACCCAG ACCGGCGTCG GCACCGTGTT CGGCACCTGG
GTGATCGGGC TCGGCGAGCA CAGCCTGTTC CTGGCACTGG TGATGACGAT GCTGCTGTCG
ATCCTGCTCG GCACCGGCAT TCCGACGATC CCGACCTACA TCATCACCGC GGCGCTGGCC
GCGCCGGCGC TCGCCAAGCT CGGTGTGCCG CTGATCGTCA GCCATATGTT CGCGTTCTAT
TACGGCATCA TGGCCGACCT CTCGCCGCCG GTGGCGCTGG CCGCGCTCGC CGCGGCGCCG
ATCGCCCGCG AGAACCCCGA CAAGATCGGC TGGGAGGCGA TGCGGATCGC GCTCGCCGGC
TACGTCATCC CGTTCATCGC GGTGTACTCG CCGGCCCTGA TGCTGCAGCC TGGCGATCCG
ATGGCCGCCG AGCTCGGCTT CTACGGCGCG GTGGTCTACG CCACCTTCAA GGCGCTGATC
GCGATCGGCC TGTTCGGCAT GGTGTCGATC GGCTTCCTGT ACACGCGGAT GACGGTGATC
GAACGCATCG TCGCGTTCGC CGCCAGCATC TGCCTGCTCG GCGAGTTCGC CTACAGCGAC
TACATCGGCT TCCTGATCAC CGCCGTGGTG GTGGCGTGGC AATGGCGGCA GCGGCCGCGT
AGCGCGGTGG CGGCCGCGTG A
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| Protein sequence | MLKPEVAVEP TPAPVHVEFD NFEHGFPAGF GPRGWRYLAY AVAIAFASFQ LVIAAWNVLP
SQVVRGVHVG FLLLLTFGLI GNFTARTDFG RAIAWLTGAV GFFCGLYQWI FYADLIQRDG
DPTHLDLAVG TLLAVLIFEG TRRLMGPALP IMCGVCLLYW FFGQYLPAPF NHRGYDFDQV
ITHLSFGTEG FYGVPIYVSA TYIFLFILFG SFLERAGMIQ LFTDVSLGLF GRSRGGPAKV
AVFASGMMGT ISGSGVANVV TVGQFTIPLM IKFGYRRAFA AGVEATASMG GQIMPPVMGA
VAFIMAETLG VDYAVIVKAA VIPAILYFAS AFWMVHLEAG KHGLVGMKKS EIPSAWRAAV
DRWYLILPLA ALVFMLFEGF TPLYAGSMGL ALTVALILGA SIVHGFSNTV LRYVFWIGLA
LVVGAASHNG LDIMRIVVIV AALVAIAAIT RGGRATLRAC RDSLADSAKS ALTVGMACAI
VGTIIGMMTQ TGVGTVFGTW VIGLGEHSLF LALVMTMLLS ILLGTGIPTI PTYIITAALA
APALAKLGVP LIVSHMFAFY YGIMADLSPP VALAALAAAP IARENPDKIG WEAMRIALAG
YVIPFIAVYS PALMLQPGDP MAAELGFYGA VVYATFKALI AIGLFGMVSI GFLYTRMTVI
ERIVAFAASI CLLGEFAYSD YIGFLITAVV VAWQWRQRPR SAVAAA
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