| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4998 |
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| Symbol | |
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| ID | 6412690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5380831 |
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| End bp | 5381634 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714881 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001993962 |
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| Protein GI | 192293357 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACGAC TTGAAGGCAA AACCGCGCTG GTGGTCGGCG CCGGTTCGAT CGGACCCGGC
TGGGGCAACG GCAAGGCGAC CGCAGTGACG TTCGCGCGCG AGGGCGCGCA GGTGTTCTGC
GTCGATCGCA ATCTCGCTGC CGCCGAGGAA ACCGTCGACA TCATCAAGGC CGAAGGCGGC
CGCGGCATCG CGTTTGCCGC CGACGTCTCG CGCGCTGCCG ACGTCGAGGC GATGGTGGCG
GCCTGCGTCA AGGCGTGGGA CGGCATCGAC GTGCTCGACA ACAATGTCGG CATCGCGGAG
ACCGGCGGCG TCGTCGAAGT CTCCGAAGCC GATTGGGACC GGGTGTTCGC GATCAACCTG
AAGAGCGCGT ATCTGGCGAT GAAGTACGTC GTGCCGGTGA TGCAGCGGCA GGGCGGCGGA
TCGATCATCA ACATCTCGTC GATCGCGTCG ATCCGGTATC TCGGCATCTC CTATGTCAGC
TACGCGGCTT CGAAGGCGGC GATGAACGCG CTGACCCGCA ACACCGCGGT GGAATACGCC
AAGGATCATG TCCGCGTGAA CGCGATCCTG CCGGGGCTGA TGAAGACCCC GATGGTGGCG
CACTCCGCCG GCCTCGCCGC CAGTTATTCG GGCGGTGACG TCGATGCGAT GTGGCGCGCC
CGCGACGCCC AGGTGCCGAT GGGTCATATG GGCGAAGCCT GGGACGTCGC CAACGCCGCC
ACATTCCTCG CCAGCGACGA GTCGAAATAC ATCACCGGCA TCGAACTGGT GGTCGACGGC
GGCCTGACGC TGAAGGTGAA TTGA
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| Protein sequence | MPRLEGKTAL VVGAGSIGPG WGNGKATAVT FAREGAQVFC VDRNLAAAEE TVDIIKAEGG
RGIAFAADVS RAADVEAMVA ACVKAWDGID VLDNNVGIAE TGGVVEVSEA DWDRVFAINL
KSAYLAMKYV VPVMQRQGGG SIINISSIAS IRYLGISYVS YAASKAAMNA LTRNTAVEYA
KDHVRVNAIL PGLMKTPMVA HSAGLAASYS GGDVDAMWRA RDAQVPMGHM GEAWDVANAA
TFLASDESKY ITGIELVVDG GLTLKVN
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