| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4972 |
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| Symbol | |
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| ID | 6412664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5349430 |
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| End bp | 5352525 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714855 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_001993936 |
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| Protein GI | 192293331 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.615697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGACCC GTCTCGTCGA GTTCTCGCTG TCGCATCGCC TGCTGGTGGT GCTGGCCACG
CTGCTGCTGA TCGGCGCCGG CGTATTGGCG TTCCGGCATC TGCCGATCGA CGCGTTCCCT
GACGTCTCGC CGGTCCAGGT CAAGATCATC ATGAAAGCCC CGGGCATGAC GCCCGAGGAG
GTCGAGACCC GGGTGACGAT GCCGCTCGAG CTCGAGATGC TCGGCATCCC CAACAAGACC
ATCCTGCGCT CGACCACCAA ATACGGCCTC GCTGACGTCA CCATCGATTT CGCCGACGGC
GTCGACATCT ATTGGGCCCG CAACCAGGTC GCCGAACGGC TCGCGTCGGC GATGAAGGAC
ATGCCCGACG GTCTGACCGG AGGTCTCGCG CCGATCACCA CGCCGCTCGG TGAGATGTTC
ATGTTCACCA TCGAAGGCGG CAACCTGACG ATGGCTGAAC GCCGCACGCT GCTCGACTGG
ACCATCCGTC CGGCGTTGCG GACGCTGCCC GGCGTCGCCG ACGTCAACTC GCTCGGCGGC
TTCGTCCGCA GCTTCGAGAT CGTGCCGGAC AATTTGGCGA TGGCCTCGCA CGGCATCACC
ATCGATATGC TGGAGAAGGC GATCGAGAAG AACAACCGCA ATGGCGGCGC CGGCCGGCTA
TCGGCCGGCG AAGAGGTGCT GCTGGTCCGC GTCGACGGTC AGGTCCGCAC GCTTGATGAT
TTGCGCGATA TCGTGCTGGC CTCGCGTGAA GGCGGCATGG TGCGGGTGCG CGATGTCGCC
GAGGTGCGGA TCGGCAGCAT CACCCGCTAT GGCGCGGTGA CGCGCGACGG CCAGGGCGAA
GCGGTGCAGG GTCTGGTGCT CGGACTGCGC GGTGCCAATG CGCGTGACGT CGTCGAAGGC
GTTCGCGCCA AGTTCAAGGA GCTGGAGCCG ACGCTGCCGA AGGGCGTCGC GCTGAACGTG
TTCTATGATC GCGGCGATCT GGTCGGCCGC GCCGTCGGCA CGGTGTCGAA GTCGCTGCTC
GAAGCCGTGG TGCTGGTGAT CGTGCTGTTG ATCCTGTTCC TCGGCGATTG GCGCGCCGCG
CTTGTGGTGG CGTTGACGCT GCCGCTGTCG GCGCTCGCCA CTTTCGTGCT GATGCGCTGG
GCCGGAATGT CGGCCAATCT GATGAGCCTT GGCGGTCTCG CAGTTGCGAT CGGCATGCTG
ATCGACGCCG CGGTGGTTGT GGTCGAAAAC GTCGTGTCGC ATCTGGCGCA TGATCGGCAC
GCCGCGCAGG TGCCGCTGCT GCACCGGATC TATCAGGCGT TGCGCGAAGT TGTGGTGCCG
GTCACTTCGG GCATCGGCAT CATCGTCATC GTGTTTCTGC CACTGCTGAC GTTGCAGGGG
CTGGAAGGCA AGCTGTTCAT CCCGGTGGCG CTGGCGATCG TGTTTGCGCT CGGCTCGTCG
CTGCTGCTGG CGCTCACCGT GATTCCGGTG CTGGCGTCGC TGCTGCTGAA GACCGCCGGT
CACAGCGACA CCTGGCTGGT GCGCAAGATC AGCGCCGGCT ACACGCCGGT GCTGCGGTTC
GCCCTGCATC ACGAGAAGGC GGTGCTGGCG GTTTCGGCGC TGGCGCTGGT CGCGACCGTG
TTCGCCTATG CGCAACTCGG CAAGATCTTC ATGCCGACGA TGGAAGAAGG CACGCCGATC
ATCAGCGTCG AGAAGCTGCC GTCGATCGGG CTTGAGGAGA GCGTCAATCT CGATCTCAGG
ATTCAGCAGG CGGTGATGAG CGCGGTGCCG GAGGTCAGGA GCATCGTGGC CCGCGTCGGC
TCTGACGAAC TCGGCCTCGA CCCGATGGGC CTCAACCAGA CCGACACCTA CATCATCCTC
AAGCCCGAGG CAGAGTGGCG CCGGCCGCAC GATAAAGACT GGTTGTTGGG CGAGCTGCGC
AAGGCGCTCG CCGGCTTCCC GGGCATCGGC TTCTCGTTCA CCCAGCCGAT CGAGATGCGG
GTGCAGGAGA TGATCATCGG CGCTCGCGGC GACGTGGTGG CGAAGATTTT CGGCACCGAC
ATCCCGACGC TCAACAGGCT GGCCGAACAG ATCACCGCAA CGTTGAAGAC GCTGAAGGGC
GCCGAAGACG TCCGCACCGC GCTGAACGAA GGCTTCGAAT ACTACAATGT GGGCATCGAC
CGGCTGCAGG CCGGTCGGCT CGGGCTCGAC GTCGACGCGC TCACCGAGGC GCTCCGCACC
CAGATCGAAG GCCGTCAGGC CGGCATCGTG GTCGAAGAAG GCCGCCGCAC GCCGGTGCTG
ATCCGCGGCA CCGAGTCGCT CCGCGAGTCC CCGGCGCGGC TTGCCGGCAT CAATCTGGTG
CTCGCCGACG GCAAGTCGGT GCCGCTCGCC AACGTCGCCA GGCTGGAGCG GATCGATGGT
CCTGTGAAAA TCGACCGGGA GAACGGCAAG CGGCTGGCGT TGGTGATGAG CAACGTGTCA
GGACGCGACC TGGTCGGCTT CGTCGACGAG GCCAAAGCCG CGGTCGCCGC CAAGGTCAAG
CTGCCGGAAG GCTACAGCAT CGTCTGGGGC GGCCAGTTCG AAAACCAGCA GCGCGCCGCG
GCTCGGCTCG GCATCGTAGT GCCGATCGCG CTGGCCTTGG TGTTCCTGCT GCTGTTCGTC
ACTTTCTCGT CGCTGCGGCA GTCGTTCCTG GTGTTCATCA ACATCCCGTT CGCGCTGATC
GGCGGCGTGT TCAGCCTGCT GATCACCGGA GAGTATCTGT CGGTGCCGGC CTCGGTCGGC
TTCATCGCGC TGCTCGGCAT CGCGGTGCTG AACGGCCTGG TGCTGGTATC GTATTTCAAC
ATGCTGCGCG GCCAGGGGCT GCCGCCCGAT CAGATCGTCG AGATCGGCGC GCAGCGGCGG
CTGCGGCCGA TCCTGCTCAC CGCCAGCATC ACCGGGTTCG GCCTGGTGCC GCTGCTCTAC
GCTACCGGTC CGGGCGCCGA CGTGCAGCGG CCGCTGGCGG TGGTGGTGAT CGGCGGCCTT
GTCACCTCGA CGCTGCTGAC GCTGGTGATC CTGCCGGTGC TGTATCGCCG CTTCGGGATT
CCTCCGGCTC CGAAAACGCA GGAGGCTCAG CCATGA
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| Protein sequence | MLTRLVEFSL SHRLLVVLAT LLLIGAGVLA FRHLPIDAFP DVSPVQVKII MKAPGMTPEE
VETRVTMPLE LEMLGIPNKT ILRSTTKYGL ADVTIDFADG VDIYWARNQV AERLASAMKD
MPDGLTGGLA PITTPLGEMF MFTIEGGNLT MAERRTLLDW TIRPALRTLP GVADVNSLGG
FVRSFEIVPD NLAMASHGIT IDMLEKAIEK NNRNGGAGRL SAGEEVLLVR VDGQVRTLDD
LRDIVLASRE GGMVRVRDVA EVRIGSITRY GAVTRDGQGE AVQGLVLGLR GANARDVVEG
VRAKFKELEP TLPKGVALNV FYDRGDLVGR AVGTVSKSLL EAVVLVIVLL ILFLGDWRAA
LVVALTLPLS ALATFVLMRW AGMSANLMSL GGLAVAIGML IDAAVVVVEN VVSHLAHDRH
AAQVPLLHRI YQALREVVVP VTSGIGIIVI VFLPLLTLQG LEGKLFIPVA LAIVFALGSS
LLLALTVIPV LASLLLKTAG HSDTWLVRKI SAGYTPVLRF ALHHEKAVLA VSALALVATV
FAYAQLGKIF MPTMEEGTPI ISVEKLPSIG LEESVNLDLR IQQAVMSAVP EVRSIVARVG
SDELGLDPMG LNQTDTYIIL KPEAEWRRPH DKDWLLGELR KALAGFPGIG FSFTQPIEMR
VQEMIIGARG DVVAKIFGTD IPTLNRLAEQ ITATLKTLKG AEDVRTALNE GFEYYNVGID
RLQAGRLGLD VDALTEALRT QIEGRQAGIV VEEGRRTPVL IRGTESLRES PARLAGINLV
LADGKSVPLA NVARLERIDG PVKIDRENGK RLALVMSNVS GRDLVGFVDE AKAAVAAKVK
LPEGYSIVWG GQFENQQRAA ARLGIVVPIA LALVFLLLFV TFSSLRQSFL VFINIPFALI
GGVFSLLITG EYLSVPASVG FIALLGIAVL NGLVLVSYFN MLRGQGLPPD QIVEIGAQRR
LRPILLTASI TGFGLVPLLY ATGPGADVQR PLAVVVIGGL VTSTLLTLVI LPVLYRRFGI
PPAPKTQEAQ P
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