| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4958 |
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| Symbol | |
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| ID | 6412650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5338389 |
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| End bp | 5340086 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714841 |
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| Product | 5'-Nucleotidase domain protein |
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| Protein accession | YP_001993922 |
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| Protein GI | 192293317 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.416285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTCGA GGCGGGAATT CCTGCAGGCG ACGGCCGCCG CATCGGCGCT GACGATCGCC
GGCGGCCTGG GGCCGATCGG GCGGGTCGCG GCCCAGCAGC GGCTGACCCA GGGCGACATC
CTGAAATTCG ATCCGCTCGG CACGGTGACG CTGCTGCATA TCACCGACAC GCACGCGCAA
CTCGTGCCGC TGCATTTCCG CGAGCCCTCG GTCAATCTCG GTGTCGGCGA GGTCAAGGGC
AAGCCGCCGC ATCTCACGGA CGAGGAATTC CGCAAGTACT TCCATATCGC CACCGGCTCG
CCGGATGCGT TCGCGCTGAC CGCGGACGAC TTCACCGCGC TTGCCCGCAA CTACGGCAAG
ATGGGCGGCT TCGACCGGAT CGCCACGCTG GTCAAGGCCA TCCGCGCCGA GCGCGGCGCC
GACAAGGTGC TGCTGCTCGA CGGCGGCGAC GCGCTGCAGG GCAGCTGGAG CTCGCTGAAG
AGCAACGGTC AGGACATGAT CGACGCGCTC GCCGGGCTCA AAGTCGACGC GATGACCGGC
CATTGGGAGT TCACCTACGG CGCCGACCGC GTCAAGGAAA TCGCCGAGAA GGCGCCGTTC
GCGTTCCTGG CGCAGAACGT CCGCGATATC GAATGGCAGG AGCCGGTGTT CGAGGCCCGC
AAGATGTTCG AGCGCGGCGG CGTCAAGATC GCGGTGATCG GCCAGGCGTT GCCGCGCACC
GCGGTCGCCA ATCCGCGCTG GATGTTTCCG AACTGGGAGT TCGGCATCCG CGAGGAGGAC
ATGCAGAAAC AGGTCGACGA TGCGCGCGCC GAGGGCGCCG CGATCGTGGT GCTGCTGTCG
CACAACGGCT TCGACGTCGA TCGCAAGCTC GCCGGCCGGG TGAAGGGCCT CGACGTCATC
CTCACCGGCC ACACCCACGA CGCGATGCCG GGCGTGATCA AGGTCGGCGA AACCGTGCTG
GTGGCGTCGG GCTCGCACGG CAAGTTCGTG TCGCGGCTCG ACATCAAGGT CGACGGCGGC
AAGGTCGCGG ACATCCGCTT CAAGCTGATG CCGGTGTTTG CGGATGCGAT CACGCCAGAC
CCGGAGATGG CCAAGCTGGT CGAGAAGCTG CGCGAGCCTT ACGCCAAGGA TCTCGCCCGC
GTCGTCGGCA AGACCGACTC GCTCTTGTAT CGCCGCGGCA ATTTCAACGG CACCTTCGAT
GATTTGATCT GCGACGCGAT GCTGAAGCAG CGCGACACCG AAATCGCGCT GTCGCCGGGC
TTCCGCTGGG GCGGCACACT GCTGCCGGAA GAGGGCATCA CCTGGGAGGC GATCACCAAC
GCCACCGCGA TCACCTATCC GAACTGCTAC CGCACGGAGA TGACCGGCGA GCAGCTCAAG
AACGTGCTCG AAGACATCGC CGACAACATC TTCCATCCCG ACCCTTACTA TCAGGGCGGC
GGCGACATGG TGCGCACTGG CGGCATGGGC TACGCGATCG ACATCTCCAA GGAGATGGGC
TCGCGCATCT CCAACATGAC GCATCTGGCA ACCGGCAAGC CGATCGAGGC GTCGAAGAAG
TACACGGTGT CCGGCTGGGC CAGCGTCAAT CAGGGCACCG AAGGTCCGCC GATCTGGGAG
GTGCTGGAGA AGCACGTCGC CAGCGCCGGC CCGGTGAAGA TCGAACCGAA CAGCGCGGTC
AAAGTCTCCG GTGCCTGA
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| Protein sequence | MISRREFLQA TAAASALTIA GGLGPIGRVA AQQRLTQGDI LKFDPLGTVT LLHITDTHAQ
LVPLHFREPS VNLGVGEVKG KPPHLTDEEF RKYFHIATGS PDAFALTADD FTALARNYGK
MGGFDRIATL VKAIRAERGA DKVLLLDGGD ALQGSWSSLK SNGQDMIDAL AGLKVDAMTG
HWEFTYGADR VKEIAEKAPF AFLAQNVRDI EWQEPVFEAR KMFERGGVKI AVIGQALPRT
AVANPRWMFP NWEFGIREED MQKQVDDARA EGAAIVVLLS HNGFDVDRKL AGRVKGLDVI
LTGHTHDAMP GVIKVGETVL VASGSHGKFV SRLDIKVDGG KVADIRFKLM PVFADAITPD
PEMAKLVEKL REPYAKDLAR VVGKTDSLLY RRGNFNGTFD DLICDAMLKQ RDTEIALSPG
FRWGGTLLPE EGITWEAITN ATAITYPNCY RTEMTGEQLK NVLEDIADNI FHPDPYYQGG
GDMVRTGGMG YAIDISKEMG SRISNMTHLA TGKPIEASKK YTVSGWASVN QGTEGPPIWE
VLEKHVASAG PVKIEPNSAV KVSGA
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