| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4940 |
|---|
| Symbol | |
|---|
| ID | 6412631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5319799 |
|---|
| End bp | 5320548 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642714822 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_001993904 |
|---|
| Protein GI | 192293299 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.25404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTGCG GCCCTATGCG GCGGCGCCGG CTTACGGCGC GCCGGTGGTG GTGGCAGGCG
CGCCTATCGT GCCGGTGCCA CGGCAATGCT GGATTGCCGG CGCCTGGCGG CCGTGCTGAC
CGCGTGCCGG CAGTCATCAT CAAGCTCGAC CGCGGCGCGT CGGCTCAGGC CGGCGGCCTT
CGACCGGTGA GCATCGAACA CGACAACGAC GAGGTGCTGA TGCTGGCCGT CGCAGAGCGC
CGGCAGCAAG CCTTTCGCGT GCTGATGGCG CGCCACATGC CGCGCGCGAT CAGGTTGGCG
CAGCGCATCG TTCGCGATCC CGCCGAAGCC GACGATATCG GCCAGGAGGC GTTTCTGCGG
GTGTGGAACA AGGCGTCGTC ATTCGATCCG AAGATCGCGC GGTTCTCGAC CTGGCTGTAC
CGGATCGTGC TGAACCTCAG TTTCGATCGC ACCCGCAAGC CGCGGCATGC GCCGATCGAG
GACGCCGCCG AGGTGCCGTC GGCCGACCCG GCGCCGGTCG AGGCGCTGAT CACTGCGCAG
CAGCAGCGGC TTTTGGAGGC GGCGCTGGCC GAACTGCCGG AGCGGCAACG GGGCGCGATC
GCGCTGTTTC ATATGGAAGG GCTGTCCGGC GAAGAGGCCG CGCGCGCGAT GAATCTCAGC
CCAAAGGCGT TCGAGTCGCT GCTCGGACGG GCGCGGCTGA CGCTCAAGAA AGCAGTCGAG
AAACGACAAG ACGACAGGAG GCGGGCATGA
|
|---|
| Protein sequence | MWCGPMRRRR LTARRWWWQA RLSCRCHGNA GLPAPGGRAD RVPAVIIKLD RGASAQAGGL
RPVSIEHDND EVLMLAVAER RQQAFRVLMA RHMPRAIRLA QRIVRDPAEA DDIGQEAFLR
VWNKASSFDP KIARFSTWLY RIVLNLSFDR TRKPRHAPIE DAAEVPSADP APVEALITAQ
QQRLLEAALA ELPERQRGAI ALFHMEGLSG EEAARAMNLS PKAFESLLGR ARLTLKKAVE
KRQDDRRRA
|
|---|
| |