| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4933 |
|---|
| Symbol | |
|---|
| ID | 6412624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5313845 |
|---|
| End bp | 5314924 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 642714815 |
|---|
| Product | Extensin family protein |
|---|
| Protein accession | YP_001993897 |
|---|
| Protein GI | 192293292 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.895839 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC TGGTTGCAGG CGGCACCTCG GCCGCGAACG CGCGTGAGCA CGTGCCGCTG
CCGAAGCCGC GTCCGGCCGA GGCGCCGCAG GCGAATGCGC GCGAGGCCGA GCCCGGCGAG
GATGAGCCAA CGCCTGCGGA AGCTGCCGCC CCCGACAGCG CGCCCGCCGC CAAAGCCGAT
GCGGCGCAGG CTCCCAAGCC ACCGTCCGAA TGCCGGCTGG CCCTGACCGA GCAGATCGCG
ATCGCGCCGA GCATTCCGGA TATCACCGGG CCGGGCGCCT GCGGCGGATC CGATCTGGTC
CGGCTCGAAG CGGTGGTGCT GCCGGACGGC CGCCGTGTCT CGATGTCGCC GGCCGCGACG
CTGCGCTGCG GCATGGCGCG GGCGATCGCT GATTGGGTGC GCGCCGACAT CGCGCCGCTG
GCCGTCTCGC TCGGCAGCCG GGTCTCGGAT CTGGACAATT TCGACTCTTA TGAATGCCGC
GGCCGCAACC GGGTGCGCGG CGCTAAGCTC AGCGAGCACG GCCGTGCCAA TGCGCTCGAC
CTCCGCGGCA TCAAGCTCGC CGACGGGCGG ATGATTTCGC TGACTGACCG CGAGGCGCCG
CGCGCGCCCA GGGAAGCCGT GATGCAATCG GTGTGCGCGC GCTTCACGAC CGTGCTCGGT
CCAGGCTCCG ACGGCTATCA CGAGGACCAC ATCCACCTCG ATCTCGCCGA GCGCCGCGGC
GGCTACCGGA TGTGCCAATG GGCCTTATAC GAGGGGCTCC CGAATATTGC GCCGGTGATG
CCGCTGCCGC GCCCGGCCGA AGCGCCGCCG CGCGAAGTCG CGGCCGACGA CGAGCGCGCG
CCGCAGCAGG CAGCCCCGTC CCAGTCCGAG GCAGCCGAGC AGGCCCCGAC CGAGGAGGCC
GAACGCGAAC AGGCCGAGAC CCCACCGCCT CCGCCGCCGA AGCCGGCCAA GCGCGCCAAG
TCCAAGGCGG CCGCCGCGAA GCCGGCCGCG AGCAAGCCGA TCGATCTGAA GCCGCAAGCG
GCGCCGGCCG CAACGCCGGC GGCTCGCGGC AAGCCGGCGC CGACACGACC ACCGGTCTGA
|
|---|
| Protein sequence | MIALVAGGTS AANAREHVPL PKPRPAEAPQ ANAREAEPGE DEPTPAEAAA PDSAPAAKAD
AAQAPKPPSE CRLALTEQIA IAPSIPDITG PGACGGSDLV RLEAVVLPDG RRVSMSPAAT
LRCGMARAIA DWVRADIAPL AVSLGSRVSD LDNFDSYECR GRNRVRGAKL SEHGRANALD
LRGIKLADGR MISLTDREAP RAPREAVMQS VCARFTTVLG PGSDGYHEDH IHLDLAERRG
GYRMCQWALY EGLPNIAPVM PLPRPAEAPP REVAADDERA PQQAAPSQSE AAEQAPTEEA
EREQAETPPP PPPKPAKRAK SKAAAAKPAA SKPIDLKPQA APAATPAARG KPAPTRPPV
|
|---|
| |