| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4873 |
|---|
| Symbol | |
|---|
| ID | 6412559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5237941 |
|---|
| End bp | 5239644 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642714750 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_001993837 |
|---|
| Protein GI | 192293232 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGTCAT CTGCACGCGC GTTGTTTCGA GCCCTGATCC TGGTCGCGAC CATGACCCTT
GTGGTCGCGA GTTCTGCCTT CGCTCAGATC CCCGGTACCA ACGGCAACGG AGCGGCACCC
GCACAACCGG CGGCGCCGAC CGACCCGCTT GGCCGCGAGA CGCCGGCCGG CATGGTGGCA
GGCTTCATCG CCGCCGCCGC CGAGCAGAAC TACGAACGCG CCGCGATGTA TCTCGACCTC
AGCCAGGAAA AAGACGCCTG GGGCCCGAGC GTCGCACAGC AGCTCCAGCG CATCCTCGAC
CGCGGCGGCG TGGTGTATTC GCGGCTGCGG CTGAGCACCG AACCGCAGGG CGACCAGGAT
GACAGCCTGC CGCCCGAGCA AGAGAAGTTC GGCATGGTGC GCACCGACCA CGGCACGGTG
GATCTGATCG CGCAGCGCGT CGAAGGCAAG GACGGCGTCA AGATCTGGCT GGTTTCCGCC
CGCACGGTTT CCGAACTGCC TGAGCTGTCC CGTACCGTGG TGTCGAGCTC GGTCGACAAG
CTCCTGCCCT ATGCGCTGCG CGACGAATAT CGCTTCGCCG GCGTACCGAT CGGCCACTGG
ATCGCGGTGA TCGTGCTGGC GTTCGTGTGC TTCGGCGCGG TCTGGCTGAT CACCGGCGCG
ATCGGCTTCA TCATCCTCAG GTTGCGGCGC TCGACCGGCG ACTCGCGGAT CAGGCGCGTG
CTCGAAGCCT CGGCGCTGCC GGTGCGGCTG TTGCTTACCG CCTGGGCGCT GCGGATCGCG
ATGACGCTCG CCGGCGTCGC CATCGTGGCG CGGCAGCATC TGTCCGGCGC CATCGAACTG
CTCGGCTGGG TCGCGCTGTC GTGGATCATT TGGCGGGTCG TGGACTCGCT GGCGGCGTTC
GCGATCGATC GCATGACGTT GCGCGGCCGG CTGTCGATGC TGTCGGCGGT CACCTTCATC
CGCCGCAGCG TCAAGTTCGT GATCATCGCG TTTGCGATCA TCGTCGGCTT CAACGCTCTC
GGCTACAACG TCACCGCCGG CCTCGCCGCC CTCGGCATCG GCGGTATCGC GATCGCTCTG
GGTGCGCAGA AGACCATCGA ACATCTGGTC GGCAGCCTGA CTCTGGTCAC CGACCAGCCG
ATGCGGGTCG GCGATTTCTG CAAGTTCGGC GACACTTCCG GCACCATCGA GGACATCGGG
ATGCGATCGA CCCGTGTTCG CACCCTCGAT CGCACCGTCG TGACGGTGCC GAACGGCGCG
CTTGCGGCGC TGCAGATCGA AAATTTCAGT CGCCGCGACA AGTTCTGGTT TCACCCGATT
CTGGAGCTGC GTTACGAGAC CTCCTCCGAG CAGATCCGCA CGTTGCTGGC TTCGCTGCGG
GAAATGCTGC TCGACCATCC GGACGTCGAT AACGATCCGG CACGGGTGCG GCTGATCGGG
CTGGCTCCGG CCGCCCTCAA GGTCGAGATC TTCGCCTATG TGCACGCGGT CGACGGCGAC
ACCTTCCTGG AAGTGCAGGA AGATCTGATG CTGAAGATCC TGGAGCTGGT CGAAGCGGCC
GGGACAGGCT TTGCGGCCGG CTCGCAGACT GTCTATGTGG CGCGCGCCAA AGGCGCCGCC
CAGCGGCAGG GCGGCGATGA AGATGCGCCG GGCACCGCAT CGGACGGTGC CAAGGTGAGG
GGCGGGATCC CGGAGCGGGT CTAG
|
|---|
| Protein sequence | MTSSARALFR ALILVATMTL VVASSAFAQI PGTNGNGAAP AQPAAPTDPL GRETPAGMVA
GFIAAAAEQN YERAAMYLDL SQEKDAWGPS VAQQLQRILD RGGVVYSRLR LSTEPQGDQD
DSLPPEQEKF GMVRTDHGTV DLIAQRVEGK DGVKIWLVSA RTVSELPELS RTVVSSSVDK
LLPYALRDEY RFAGVPIGHW IAVIVLAFVC FGAVWLITGA IGFIILRLRR STGDSRIRRV
LEASALPVRL LLTAWALRIA MTLAGVAIVA RQHLSGAIEL LGWVALSWII WRVVDSLAAF
AIDRMTLRGR LSMLSAVTFI RRSVKFVIIA FAIIVGFNAL GYNVTAGLAA LGIGGIAIAL
GAQKTIEHLV GSLTLVTDQP MRVGDFCKFG DTSGTIEDIG MRSTRVRTLD RTVVTVPNGA
LAALQIENFS RRDKFWFHPI LELRYETSSE QIRTLLASLR EMLLDHPDVD NDPARVRLIG
LAPAALKVEI FAYVHAVDGD TFLEVQEDLM LKILELVEAA GTGFAAGSQT VYVARAKGAA
QRQGGDEDAP GTASDGAKVR GGIPERV
|
|---|
| |