Gene Rpal_4839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4839 
Symbol 
ID6412525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp5202721 
End bp5203341 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content63% 
IMG OID642714716 
Productpeptidyl-tRNA hydrolase 
Protein accessionYP_001993803 
Protein GI192293198 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0193] Peptidyl-tRNA hydrolase 
TIGRFAM ID[TIGR00447] peptidyl-tRNA hydrolase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.881086 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCTGT TCGTTGGGCT GGGCAATCCC GGGGCGAAGT ACCAGGGCAA CCGGCACAAC 
ATCGGCTTCA TGGTCATCGA CGAAATCGCG CGGCGTCATG GCTTCTCGCC ATGGCGCCGT 
CGTTTTCAGG GCGAGACCGC AGACGGTGTG CTCGACGGCG AGCGCATCAC ACTACTGAAG 
CCGCTCACCT ACATGAACGA GTCCGGCCGC GCCGTGCAGG ATGCGGCCAG CTTCTACAAG 
ATCGGGCAGA ACGAGATCGC CGTGTTTCAC GACGAGATCG AGCTGCCGCC GGCGAAAGTT 
CGCGTGAAGG TCGGCGGCGG CATCGCCGGG CACAACGGCC TGCGCTCGAT CTCGGCGCAT 
ATCGGCAACG ATTATCTTCG CGTGCGGCTC GGCGTCGGCC ATCCGGGCGC GAAGGAGCTG 
GTGCACAATC ACGTGCTCGG CGATTTTGCC AAGAGCGAGC GGCCCTGGGT CGAAGCTTTG 
TGCGAGATCG CCGCGGACAA CGCCGGCCTG ATCGCCAAAG GTAAGGACGC CTCCTTCGCC 
AACAAGGTGC ATCTGGCGAT GCAGGCGAAG GGATTTTACG ACAACGACAA ACAGGCCAAA 
GGCGGCGAGC GCGACAAGTA A
 
Protein sequence
MRLFVGLGNP GAKYQGNRHN IGFMVIDEIA RRHGFSPWRR RFQGETADGV LDGERITLLK 
PLTYMNESGR AVQDAASFYK IGQNEIAVFH DEIELPPAKV RVKVGGGIAG HNGLRSISAH 
IGNDYLRVRL GVGHPGAKEL VHNHVLGDFA KSERPWVEAL CEIAADNAGL IAKGKDASFA 
NKVHLAMQAK GFYDNDKQAK GGERDK