| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4824 |
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| Symbol | |
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| ID | 6412510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5190666 |
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| End bp | 5193701 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714701 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001993788 |
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| Protein GI | 192293183 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.748709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAGA CTCCCGACAA GCCTGGCAAG CCGGCAAAAA CCCCGAAATC CAAAGCACAT
CGGCCCGACG TGAAGCCGAT CGGCCCTGCG CTGGCCGAAC TGCTGAACCC GGCGCTGAAT
CGCGGCGACG CGGGCCTCGG CTCCGGCACC GGCCTGCAGC CGCCACCGGA CAATTCGCGC
GACCGCCGCA CCGGCGGCGA AGCCGCGGTG CATCGTGGCC GCGCCTCGAC ACCCAATCCA
GGCGACGGCG CCACACCGCG GCCGACGGCC CTGCAGCCTT ATCCGCAGCC GCCGGGCGCC
AGCCGCGGCG GCCTCAATGA AGCGCCGCAG GCCAATTACG GCACCGCCGC CACCATCCCG
ACGCTCGATC CGGAACTGGC GCGGCAGCTC GGCTTGCCGA CCGAGGAGGA CGATGCCGAA
GCCTTGGCGC GGCCGCCGCG CAGCAAGATG GAGGCGCTCG GCGTCAAGGC CACCGCCGAG
GCACTGGAGA GCCTGATCCG CGACGGCCGC CCCGAGTTCA AAGGCGAAGA CGGCGGCGTC
AAGCTGTGGG TGCCGCACCG GCCGCCGCGC CCGGAGAAAT CCGAAGGCGG CGTCCGCTTC
GTGCTGAAGT CCGACTACCA GCCGCGCGGT GACCAGCCGA CCGCGATCAA AGAACTGGTC
GAAGGCCTCG ACAGGAGCGA CCGCACGCAG GTGCTGCTCG GCGTCACCGG CTCGGGCAAG
ACCTACACCA TGGCCAAGGT GATCGAGGCG ACGCAGCGCC CGGCGATCAT CCTGGCGCCG
AACAAGACGC TGGCGGCGCA GCTCTACGGC GAGTTCAAGA ACTTCTTCCC CGACAACGCC
GTCGAGTACT TCGTCTCGTA TTACGACTAC TACCAGCCCG AAGCCTACGT TCCGCGCACC
GACACCTATA TCGAGAAGGA TTCGTCGATC AACGAACAGA TCGACCGGAT GCGCCACGCC
GCGACCCGCG CGCTGCTCGA GCGCGACGAC GTCATCATCG TCGCCTCGGT GTCGTGCATC
TACGGTATCG GCTCGGTCGA GACCTATACG GCGATGACCT TCGCGCTGAA GCGCGGCGAG
CGCATCGACC AGCGCCAGCT GATCGCCGAT CTGGTGGCGC TGCAATACAA GCGCACCCAG
GCCGACTTCT CGCGCGGCAC CTTCCGGGTG CGCGGCGACG TCATCGACAT CTTCCCGGCG
CACTATGAGG ATCGCGCCTG GCGGGTGAAG ATGTTCGGCG ACGAGATCGA GGGCATCGAG
GAATTCGACC CGCTCACCGG CCACAAGCAG GACGAGCTGG AATTCGTCAA GATCTACGCC
AACTCGCACT ATGTGACGCC GCGGCCGACG CTGATCCAGG CGATTCAGTC GATCAAGACC
GAGTTGAAAT GGCGGCTCGA TCAGCTGCAT GCACAAGGCC GCCTGCTGGA AGCACAGCGG
CTGGAGCAGC GCACCACCTT CGACATCGAG ATGATGGAAG CGACCGGCTC CTGCGCCGGC
ATCGAGAACT ACTCACGGTA CCTGACCGGC CGCCGGCCGG GCGAGCCACC GCCGACGCTG
TTCGAATATG TGCCCGACAA CGCGCTGGTG TTCGCCGACG AAAGCCACGT CTCGATCCCG
CAGATCGGCG CGATGTTCAA GGGCGACTTC CGCCGCAAGG CGACGCTGGC CGAATACGGC
TTCCGCCTGC CGTCCTGCAT GGACAACCGG CCGCTGCGCT TCGAAGAATG GGACATGATG
CGGCCGCAGA CGGTCGCGGT GTCGGCGACG CCGGCAGCAT GGGAGCTGAA CGAAAGCGGC
GGCGTGTTCG TCGAGCAGGT CATTCGCCCC ACCGGCCTGA TCGACCCGCC GGTCGATATC
CGCCCGGCGC GCACCCAGGT CGACGACCTC GTCGGCGAGG TCCGCGCCAC TGCGGCGCGC
GGCTATCGCA CGCTGATCAC CGTGCTGACC AAGCGGATGG CCGAGGACCT CACCGAGTTC
CTGCATGAGC AGGGCATCCG CGTGCGCTAC ATGCATTCGG ACATCGACAC CATCGAGCGC
ATCGAGATCA TCCGCGATCT GCGGCTCGGC GCGTTCGACG CGCTGGTCGG CATCAACCTC
TTGCGCGAAG GCCTCGACAT TCCCGAATGC GCGCTGGTTG CGATCCTCGA CGCCGACAAG
GAAGGCTTCC TGCGCAGCGA GACCTCGCTG ATCCAGACCA TCGGCCGCGC CGCCCGTAAC
GTCGACGGCA AGGTCATCCT CTATGCCGAT CAAATGACCG GCTCGATGCA GCGCTCGATC
GACGAGACCA ACCGCCGCCG CGAGAAGCAG ATCGAATACA ACACCGCGCA CGGCATCACG
CCGGAGAGCG TGAAGAAGTC GATCGGCGAC ATTCTCAACA GCGTGTACGA GCGCGACCAC
GTCCTGGTCG AGATCGGCGA CGGCAAGGGC GCCGGCTTCA CCGACGACGC CGCGGTGATC
GGCCACAATT TCGAAGCGGT GCTGGCGGAT CTCGAAACCC GGATGCGCGA AGCCGCGGCC
GATTTGAACT TCGAAGAAGC CGCCCGTCTG CGCGACGAAG TCAAACGCCT GCGCGCCACC
GAGCTCGCAG TGATCGACGA TCCGACCGTG AAGCAGCGCA AGGTCGCCGA CAAAGCCGGC
AGCTACGCCG GCAACAAGCG CTATGGCGAC GCCGCGAACC TGCCAGCCGA TGCGGGCAAA
GGCGGACGCG GCAAGTCAGG ATCACGAGGC GGCGCCGCCG CGTCACCCTC CCCCTTGCAG
GGACGGTCGG CCGAAGACCG GGGCGGGGGT GCCGCGAGCA CGGCGTCAAA GGTCCATAAA
CCCGACCTCG ATGAGATGGG TATCGCCGGC TTTCACGAAT TCAAGAAAGT CCAGCGCCCC
AAGCCGCGCA AGCCGACGCT CGACGAAATG GGGCCGGGCA CGGAGAGCAA GATCTATCAG
CCGACCTCCA GCCGCGAAGC CGGCCCGGAA TTCGGCCCCT CCCCGCGCAG CACCGGCGGC
GCGCCAGGCA AGCGGGGCGG ATGGAAGAAG AGGTAG
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| Protein sequence | MAKTPDKPGK PAKTPKSKAH RPDVKPIGPA LAELLNPALN RGDAGLGSGT GLQPPPDNSR
DRRTGGEAAV HRGRASTPNP GDGATPRPTA LQPYPQPPGA SRGGLNEAPQ ANYGTAATIP
TLDPELARQL GLPTEEDDAE ALARPPRSKM EALGVKATAE ALESLIRDGR PEFKGEDGGV
KLWVPHRPPR PEKSEGGVRF VLKSDYQPRG DQPTAIKELV EGLDRSDRTQ VLLGVTGSGK
TYTMAKVIEA TQRPAIILAP NKTLAAQLYG EFKNFFPDNA VEYFVSYYDY YQPEAYVPRT
DTYIEKDSSI NEQIDRMRHA ATRALLERDD VIIVASVSCI YGIGSVETYT AMTFALKRGE
RIDQRQLIAD LVALQYKRTQ ADFSRGTFRV RGDVIDIFPA HYEDRAWRVK MFGDEIEGIE
EFDPLTGHKQ DELEFVKIYA NSHYVTPRPT LIQAIQSIKT ELKWRLDQLH AQGRLLEAQR
LEQRTTFDIE MMEATGSCAG IENYSRYLTG RRPGEPPPTL FEYVPDNALV FADESHVSIP
QIGAMFKGDF RRKATLAEYG FRLPSCMDNR PLRFEEWDMM RPQTVAVSAT PAAWELNESG
GVFVEQVIRP TGLIDPPVDI RPARTQVDDL VGEVRATAAR GYRTLITVLT KRMAEDLTEF
LHEQGIRVRY MHSDIDTIER IEIIRDLRLG AFDALVGINL LREGLDIPEC ALVAILDADK
EGFLRSETSL IQTIGRAARN VDGKVILYAD QMTGSMQRSI DETNRRREKQ IEYNTAHGIT
PESVKKSIGD ILNSVYERDH VLVEIGDGKG AGFTDDAAVI GHNFEAVLAD LETRMREAAA
DLNFEEAARL RDEVKRLRAT ELAVIDDPTV KQRKVADKAG SYAGNKRYGD AANLPADAGK
GGRGKSGSRG GAAASPSPLQ GRSAEDRGGG AASTASKVHK PDLDEMGIAG FHEFKKVQRP
KPRKPTLDEM GPGTESKIYQ PTSSREAGPE FGPSPRSTGG APGKRGGWKK R
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