| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4797 |
|---|
| Symbol | |
|---|
| ID | 6412483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5163959 |
|---|
| End bp | 5165224 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714675 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001993762 |
|---|
| Protein GI | 192293157 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.292232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACAAGC CTGTCACCGT CGATGCGGAT ATCGCTGCTC CGGTCAATCC GGCCGAGCTG
CCGCTACCCG AACTTACCAA GCCGGCGGCG CCTGCCGCGG CCGGGCCGGC CTACATCGTG
CTCGGTGGCA TCAGCTTCTC GCATTTCCTC AACGATACCA TGCAGTCGCT GATCCCTTCG
GTGTATCCGA TCCTGAAGGC GAACTACGCG CTCGATTTCG GCCAGATCGG CATGATCACG
CTGGCGTTCC AGTTCACCGC GTCACTGCTG CAGCCGGTGG TCGGGCACAT CACCGACAAG
AAGGCGCAGC CGTTCTCGCT GGCGATAGGC ATGGGCTCGA CCTTCCTGGG GTTGCTGCTG
CTCAGCGTCG CGCATTCCTA TGCGGTGATC CTGATCGCCG CGGCGATGAT CGGCCTCGGT
TCGGCGGTGT TTCATCCTGA GTCGGCGCGG ATCGCGCGGC TTGCCTCGGG CGGTCGCCAC
GGCATGGCAC AATCGGTGTT TCAGGTCGGC GGCAATGCCG GCACCGCGCT CGGTCCGGTG
CTGGCGGCGC TGATCGTGGT GCCGTTCGGC CAGCCGTCGA TCGCCTGGTT CTCGTCGATC
GCGTTCCTCG CCATTATCGT GCTGTGGCGG ATCGGCGTCT GGTACAAGCC GCAGGTCGCC
GGCAAGAAGA AGATGGCGGT GCAGCCGCAT CCGCACGCGC CGAGCCGGCG CCGGGTGATG
GTCGCGCTGG TGGTGCTGGT GGCGCTGCTG TTCTCCAAGC AGCTCTATCT GTCGAGCCTG
TCGAGCTACT ACACGTTCTA TCTGATCGAG AAGTTCCACG TCTCGACCCA GACCGCGCAG
ATGTTCCTGT TCATCTTCCT GGCTGCAACC GCAGCCGGCG TGTTCTTCGG TGGCCCGCTC
GGCGACCGGT TCGGCCGCCG CTATGTGATC TGGTTCTCGA TCCTGGGTAT CCTGCCGTTC
ACCCTGGCGC TGCCCTATGC GGGGCTCACC GCCAGCGCGG TGCTCACGGT GTTCATCGGC
TTCATCCTGG CGTCGGCGAC GCCGGCGATC ATCGTGTTCG CCCAGGAACT GATGCCGCAT
CGCTTCGGCA TGATCTCCGG CGTGTTCTTC GGCTTCGCGT TCGGCATCGG CGGTCTCGGC
GCGGCGGCGC TTGGCCAAGT CGCTGACATC CGTGGCATCG ACTTCGTCTA TCAGGTCTGT
TCGTTCCTGC CGGCGCTCGG CCTGCTGGCG GTGCTGCTGC CGAAGATGCC CCGGCACGCC
CACTAG
|
|---|
| Protein sequence | MNKPVTVDAD IAAPVNPAEL PLPELTKPAA PAAAGPAYIV LGGISFSHFL NDTMQSLIPS
VYPILKANYA LDFGQIGMIT LAFQFTASLL QPVVGHITDK KAQPFSLAIG MGSTFLGLLL
LSVAHSYAVI LIAAAMIGLG SAVFHPESAR IARLASGGRH GMAQSVFQVG GNAGTALGPV
LAALIVVPFG QPSIAWFSSI AFLAIIVLWR IGVWYKPQVA GKKKMAVQPH PHAPSRRRVM
VALVVLVALL FSKQLYLSSL SSYYTFYLIE KFHVSTQTAQ MFLFIFLAAT AAGVFFGGPL
GDRFGRRYVI WFSILGILPF TLALPYAGLT ASAVLTVFIG FILASATPAI IVFAQELMPH
RFGMISGVFF GFAFGIGGLG AAALGQVADI RGIDFVYQVC SFLPALGLLA VLLPKMPRHA
H
|
|---|
| |