| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4789 |
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| Symbol | |
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| ID | 6412475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5155065 |
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| End bp | 5156654 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642714667 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_001993754 |
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| Protein GI | 192293149 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCTC CCAAAGTCCT CATTTCCGAC GCGCTGTCGG AAGCCGCCGT CCAGATCTTC
AAGGATCGCG GCATCGACGT TGATTTCCAG CCGAACCTCG GCAAGGACAA AGACAAGCTC
GCCGAGATCA TTGGCAATTA CGACGGCCTC GCGATCCGCT CCGCCACCAA GGCGACGGCG
AAGATCCTGG AGAAGGCCAA CCGTCTCAAG GTGATCGGCC GCGCCGGCAT CGGCGTCGAC
AACGTCGAGA TTCCCGCGGC GACCGCCAAG GGCATCATCG TGATGAACAC CCCGTTCGGC
AATTCGATCA CCACCGCCGA GCACGCCATC ACCATGATGC TGTCGCTGGC CCGCGAGATC
CCTGCCGCCG ACGCCTCGAC CCAGGCCGGC AAGTGGGAAA AGAACCGCTT CATGGGCGTC
GAAATCACCG CCAAGACCCT CGGCGTGATC GGCTGCGGCA ACATCGGCTC GATCGTCGCC
GACCGCGCGC TCGGCCTGAA GATGAAGGTG ATCGCGTTCG ATCCGTTCCT GTCGCCGGAG
CGCGCCAAGG ATCTGGGCGT CGAGAAGGTC GAGCTCGAAG ACATCTTCAA GCGCGCCGAC
TTCATCACCC TGCACACCCC GCTCACCGAC AAGACCAAGA ACATCATCGA CGCGGCCGCC
ATCGCCAAGA TGAAGAAGGG CGTCCGCATC ATCAATTGCG CCCGCGGCGG TCTGGTCGAC
GAGAACGCCC TCGCCGAAGC GCTGAAGTCC GGCCACGTCG CCGGCGCGGC GTTCGACGTG
TTCTCGGAAG AGCCGGCCAC CAAGAACGTG CTGTTCGGCC TGCCGAACGT GATCTGCACC
CCGCATCTCG GCGCCTCGAC GACTGAAGCG CAGGAGAACG TCGCGCTGCA GGTCGCCGAG
CAGATGAGCG ACTACCTGCT GACCGGCGCG ATCACCAACG CGATCAACTT CCCGTCGATC
ACCGCCGAAG AAGCCCCGAA GCTGAAGCCG TTCATCGAAC TGGCCGAAAA GCTCGGCTCG
TTCGCCGGCC AGCTCACCGA GACCGGCATC ACCAAGGTCA CCATCACCTA TGAGGGTGAA
GTGGCCGAGA TGAAGATCAA GGCGCTGACC TCGGCGGTGC TGTCGGGCCT GCTGCGGCCG
ATGCTGGGCG ACATCAATGT CGTGTCGGCG CCGGTGATCG CCAAGGAGCG CGGCATGGTG
GTGGATGAAG TCGTCCGCGC CGCCGAGAGC GACTACGAGA GCCTGATCAC CCTGACGGTG
ACCACCGAGA AGCAGGAGCG CTCTGTGTCC GGCACGGTCT ATGCCGACGG CAAGCCGCGC
CTGGTCGACA TCAAGGGCAT CCGCGTCGAC GCCGAGTTCG GTTCTTCGAT GATCTACGTC
ACCAACGAGG ACAAGCCGGG CTTCATCGGC AAGTTCGCCA GCCTGCTCGG CGACGCCAAG
GTCAACATCG CGACCTTCAA CCTCGGCCGT CACACCGAAG GCGGCGACGC CATCGCGCTG
GTGACGATCG ACGGTCCGGC CCCGACTGAG GTGCTGGAGA AGGTCCAGGC CCTGCCGCAG
GTCAAGCAGG TCAAGGCGCT GACGTTCTGA
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| Protein sequence | MTAPKVLISD ALSEAAVQIF KDRGIDVDFQ PNLGKDKDKL AEIIGNYDGL AIRSATKATA
KILEKANRLK VIGRAGIGVD NVEIPAATAK GIIVMNTPFG NSITTAEHAI TMMLSLAREI
PAADASTQAG KWEKNRFMGV EITAKTLGVI GCGNIGSIVA DRALGLKMKV IAFDPFLSPE
RAKDLGVEKV ELEDIFKRAD FITLHTPLTD KTKNIIDAAA IAKMKKGVRI INCARGGLVD
ENALAEALKS GHVAGAAFDV FSEEPATKNV LFGLPNVICT PHLGASTTEA QENVALQVAE
QMSDYLLTGA ITNAINFPSI TAEEAPKLKP FIELAEKLGS FAGQLTETGI TKVTITYEGE
VAEMKIKALT SAVLSGLLRP MLGDINVVSA PVIAKERGMV VDEVVRAAES DYESLITLTV
TTEKQERSVS GTVYADGKPR LVDIKGIRVD AEFGSSMIYV TNEDKPGFIG KFASLLGDAK
VNIATFNLGR HTEGGDAIAL VTIDGPAPTE VLEKVQALPQ VKQVKALTF
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