Gene Rpal_4780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4780 
Symbol 
ID6412466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp5144163 
End bp5145068 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content68% 
IMG OID642714659 
Productprotein of unknown function DUF6 transmembrane 
Protein accessionYP_001993746 
Protein GI192293141 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.8061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATCGCCT GGTCCCGCTC CGCTTTCGGC TGGCTCGCTC ACCAGCCCTA TCTGCTGCTC 
AGCCTGACCT CGCTGTTCTG GGCCGGCAAC ATCGTGCTCG GCCGCGCGGT CGCCGGCCAT 
GTGCCGCCGG TGACGCTGAG CTGCGCGCGC TGGGTCGGCG CGATGCTGTT GCTGCTGCCG 
TTTGCCTGGC CGCATCTGCG GCACGATTGG CGCAAGCTGC GCGCGCAGTG GAAACTGATG 
ATCGTGCTAT CCGCGACCGG CTTCGCGATC AACAACGCGC TGTCGTATTG GGGGCTGCAA 
TACACCCAGG CGCTCAACGC GCTGTTGATG CAGTCTTCCG GGCCGCTGTT CGTGGCGCTG 
TGGTCGCTCT TGCTGTTCGG CGTGCGGCTG ACCTGGATGC AGGCGGCCGG CATCGCGCTG 
TCGCTGCTCG GCGTGCTGAC CATCATCCTG CGCGGCGACT TCGCGGCGCT GGCAGGGATC 
GAACTCAACC GCGGCGACCT GATGGTGGCC GGCGCGCTGT GCGCATTCGG GCTGTATTCG 
GCCCTGATGC CGAAGCGGCC CGCAACCCAT CCGCTGTCGC TGATCGTGGT GACGACCGGC 
TGCGGCGCGC TGCTGTTGCT GCCGTTCAGC GCCTGGGAAT ATGCCAGCGG CGTGCGGCCG 
AGCGCCGACT GGCTCAGCGT CGCGACGCTC GCCTATGTGG TGATCTTCCC CTCGATGCTG 
GCGTATCTGT GCTTCAACCG CGGCGTGGCG CTGATCGGAC CGAACCGCTC GGCGCCGTTC 
CTGCATCTGA TGCCGGTGTT CGGCTCGGTG ATGGCGATCG TGCTGCTCGG CGAAAAGCCG 
GAGCTGTTCC ACCTCGCCGG CTACGCCATG GTGGTGGCCG GCGTGTTCAT CGCGGCGCGG 
CGCTGA
 
Protein sequence
MIAWSRSAFG WLAHQPYLLL SLTSLFWAGN IVLGRAVAGH VPPVTLSCAR WVGAMLLLLP 
FAWPHLRHDW RKLRAQWKLM IVLSATGFAI NNALSYWGLQ YTQALNALLM QSSGPLFVAL 
WSLLLFGVRL TWMQAAGIAL SLLGVLTIIL RGDFAALAGI ELNRGDLMVA GALCAFGLYS 
ALMPKRPATH PLSLIVVTTG CGALLLLPFS AWEYASGVRP SADWLSVATL AYVVIFPSML 
AYLCFNRGVA LIGPNRSAPF LHLMPVFGSV MAIVLLGEKP ELFHLAGYAM VVAGVFIAAR 
R