| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4723 |
|---|
| Symbol | |
|---|
| ID | 6412409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5084750 |
|---|
| End bp | 5085586 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642714602 |
|---|
| Product | UspA domain protein |
|---|
| Protein accession | YP_001993689 |
|---|
| Protein GI | 192293084 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.973873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTACT CGACGGTGAT GGTCGCGCTC GCGTTCGACC AGCCCAACGC GTGTCGTCTC
AGCATTGCGG CGGAACTCGC CGAGCGTTTC GAGTCGCGAC TGATCGGAAT TGCGGCGTCC
GAACTGAGCC CGCCGGTGTA CTACATGTCC GGCAGCCAGG CCGAACGGCT GATGGTGGAG
GGGCTCGCGA CCATCAAGCA GCGGCTGTCC GAGCTTGAGG CTGAGTTCCG TCAGGCGATG
ACCGGCCACA CCCGCGAACT GCAATGGCGC AGCGCCATTG AACAGCCGTC GCGCTATATC
GTGCAGCAGG CGCGCGCCGC GGACATCGTG GTGTGCGGCG CCGGCGTGTC GAGCCTGCTC
ACCGATCCGT TCGCGTCGGT CGATCCGGCT GACCTTGTGA TGGAGATCGG GCGCCCGCTC
CTGGTGGTAC CGCCGAATGT GTGCCGGATC GATCTGTCGA GCGTGTTGGT GACGTGGAAG
GACAATCCGG AGGCGCGTCG CGCGATCGTG GACGCGCTGC CGCTGTTGCG CCAGGCCAGC
CACGTCACCG TGGTCGAGAT CGTCGAGAGC GAGGAAGACC ATGGCCGTGC AGCCGCGCTG
GCCGGCGTGC ACGACGTGGT CGATTGGCTG TCGCGTCATC ACATCCATGC CATCGGCGAG
GTGCCGGAAC ACACCGGGGA TGTGTCGCGG CAAATCACCG ACATCGCCCG GCAGGTCGGC
GCCGGCATCG TGGTCGCTGG CGCTTACGGG CGTTCGCGCT TCCGCGAGTG GATTCTCGGC
GGTGTCACCC AGCACCTGCT GGAGCAGACC TCGCGCTGCG CCTTCCTGGC GCGTTAG
|
|---|
| Protein sequence | MTYSTVMVAL AFDQPNACRL SIAAELAERF ESRLIGIAAS ELSPPVYYMS GSQAERLMVE
GLATIKQRLS ELEAEFRQAM TGHTRELQWR SAIEQPSRYI VQQARAADIV VCGAGVSSLL
TDPFASVDPA DLVMEIGRPL LVVPPNVCRI DLSSVLVTWK DNPEARRAIV DALPLLRQAS
HVTVVEIVES EEDHGRAAAL AGVHDVVDWL SRHHIHAIGE VPEHTGDVSR QITDIARQVG
AGIVVAGAYG RSRFREWILG GVTQHLLEQT SRCAFLAR
|
|---|
| |