Gene Rpal_4687 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4687 
Symbol 
ID6412373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5045873 
End bp5046661 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content64% 
IMG OID642714566 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001993653 
Protein GI192293048 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAATC TGACAGGCAA GACCGCGGTC GTGACCGGCT CGACCTCGGG CATCGGGCTC 
AGCTATGCCC GCGCCTTCGC CAAGGCCGGC GCCAACGTTG TGATCAACGG CATGGGCGAC
GCGGACGCGA TCGAGAAGGA ACGCAAGGCG ATCGAGAGCG AATTTGCGGT CAAGGCAGTG
TACTCGCCGG CCGACATGCT GAAGCCGGCC GAGATAGCCG AGATGATCAA GCTCGGCGAG
ACCACCTTCG GTTCGGTCGA CATCCTGGTC AATAATGCCG GCATCCAGTT CGTGTCGCCG
ATCGAGGATT TTCCGATCGA GAAGTGGGAT GCGATCATCG GCATCAACCT GTCGTCGGCG
TTTCATGGCA TCCGCGCCGC GGTGCCGGGG ATGAAGAAGC GCGGCTGGGG CCGTATCATC
AACACCGCCT CGGCGCACTC GCTGGTCGCA TCGCCCTTCA AGTCGGCCTA TGTGGCGGCC
AAGCACGGTA TCGCGGGCCT GACCAAGACG GTGGCGCTGG AGCTCGCCAC CCACAAGATC
ACCTGCAACT GCATCTCGCC CGGCTACGTC TGGACGCCGC TGGTCGAGAA GCAGATCCCC
GACACCATGA AGGCGCGTAA CCTAACCAAG GAGCAGGTGA TCAACGACGT CCTGCTCGCC
GCCCAGCCGA CCAAGCAGTT CGTCACCCCT GAGCAGGTCG CCGCGCTCGC GGTCTATCTC
TGCGGCGACG ACGCCAGCCA GATCACCGGC GCCAACCTGT CGATGGACGG CGGCTGGACC
GCGGCGTAA
 
Protein sequence
MTNLTGKTAV VTGSTSGIGL SYARAFAKAG ANVVINGMGD ADAIEKERKA IESEFAVKAV 
YSPADMLKPA EIAEMIKLGE TTFGSVDILV NNAGIQFVSP IEDFPIEKWD AIIGINLSSA
FHGIRAAVPG MKKRGWGRII NTASAHSLVA SPFKSAYVAA KHGIAGLTKT VALELATHKI
TCNCISPGYV WTPLVEKQIP DTMKARNLTK EQVINDVLLA AQPTKQFVTP EQVAALAVYL
CGDDASQITG ANLSMDGGWT AA