| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4646 |
|---|
| Symbol | |
|---|
| ID | 6412332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5007311 |
|---|
| End bp | 5009941 |
|---|
| Gene Length | 2631 bp |
|---|
| Protein Length | 876 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642714525 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001993612 |
|---|
| Protein GI | 192293007 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACCT GTCTGTTTTC GGCGGCGGCT AACGCCGCGC CCGGCTTCGT GCCCGCCAGC
TACATCGGCA GCATCGAACC TGAGATCCTC TGGGAATTGC TGATCGGCGG CTTCGTCGTC
GCGGCCTTCA CGTGCGCGAC CGCACTGTGG GCGACCTCAA TGCTGCGCAA GCAGCGCCGC
GCCCATCGCC GCAAGAACAT TCTGGTCGAC TCCGTGCTGA ACAAGCTGCA GCAGGGCGTC
GTGATCGCCG ACGCGTCCGG CCGCATCGTG TTCTGCAACG ATCGCTATCT GGCGATGTAC
GACCTGACGC GCGCAGAGGT CACGCCGGGA ATGCCCGGGC GCGATCTGCT GGCTCTGCGA
CGCGCGCGCG GCATGCTCGA TCTGACCAAT GACGAGTTCT ATCGCAACGC CGGTCTGCCG
CAGGGCTACG TGGCCGAGTT GCCGGACGGT CGCTGCATCC AGGTCAAGTT CTCGCGGCTC
GCCAATGGCG GCACCATCGC GACCCACGAC GATTGCAGCG AACTGCGCCG GATGTCGAAG
GAGCTGTCTA CCACCAAGCA GTTCCTGGAG TCGGTGATCG ACAACATCCC GGTCTGCGTC
GCCGCCAAGA GCATCGAGGA CGGTCGCTAC ATCCTGGCCA ACCGGGCGTT CGAGACGCTG
TCAGGGCTAA GCCGCGACAA GATCATCGGC GCCACCGCCG ATCAGTTGTA TCCCGCGCGG
TCCGCGGCGA GCATCCGCGA GGCGGACCAG AGCGCGCTGC AATCGATCAC CGGCGCCTTC
CAATCCGAGT TGACGGTTGA GCTGGGGCGG GGCGATCGCA TTCTCGCCAG CAACCGCGTG
GTCGCTCGTA ACGAACACGG CGAGCCTGAA TTCCTGATCG CGCTGTTCGA GGACGTCACC
AATCGCCGCG CATTGTCGGT CGAGCTGGAA AAGACCAAGC GCTTCCTCGA ACTGGTCATC
GACAACATTC CGGTGGCGCT GACGGTGCAG AACACCGCGG ACGGCCGCTA CATGCTCGCC
AACCGCGGCG CCGAGATCAT CCTCAACCGC CGCCGCGAGG ATGCCACCGG GCTGACCACC
GGCGAGATCT TCAATGCCAA GGAAGCCCGG CTGATCGCCG AGCGCGACGA ACTGGCGATC
CGCAAGGGCG GCCTTGTGGT CGAAGAGCAT CCGATCTCGA CCGCCGGCGG ATTGCGGTTG
TTCGTCACCC GGCGGATGAC CGTCACCGAC GAGGCCGACC AGGCGCACTA CCTGATCAAG
ACCCATGTCG ACGTTACCGA TCGCCGCCAG ACCGAGGCGC GGATGGCGCA CATGGCGTAT
CACGACGGCC TCACCGACCT GCCGAACCGC GACGCGTTCC TGAAGTCTCT GACGCAGATG
ATCGAGGCGT GCGACAATGC GGTCGATGAA TTCGCCGTGC TCTCCGTCGA CCTCGATGGC
TTGAAAGAGA TCAACGACGT GTTCGGCCAC GCGATCGGCG ACAAGCTGCT GATCGAGGTG
GCGCGGCGGA TCGAATGGGC GTCCCGCGGT GGCGTAGTGG CGCGGCTGTC CGGCGACGAG
TTCGGCCTGA TCATTGATGG CCCGCAGCCG GCTGCGGCGC GCGACCTCGC CAGCATGGTG
GCCAAGGCGC TGGCACCGGG CTTCGTGATC GACGGCAAGA CGGTGCGGAT CGGCGTCACC
ACCGGCGTCG CGCTGTTCCC CGCCAACGGC ACCGACGCGG CCTCGCTGCT CGCCAACGCC
GGCGCCGCCC TGTTCCGTGC CAAGGCCAAG GCGCGTGGCT CGGTCACGGT GTTCGAGCCC
GAAATGGATA TGCAGATCCG GGACCGGCGG GTGCTGCATC AGGATCTGTC GAACGCGATC
CGCAACGGCG AGATGTCGCT GTACTACCAG CCGCAGGCGT CGAGCACCAA GCGGGTCGGC
AACAACGACA TTGTCGGCTT CGAAGCGCTG ACGCGCTGGC GTCATCCGAC CCGCGGCTTC
GTGCCGCCGA GCGAGTTCAT TCCACTCGCC GAAGAGAGCG GGCTGATCGT CGAGCTCGGC
GAGTGGATCT TGCGTGAAGC CTGCCGTCAG GCCGCCTCGT GGGCGCGGCC GCTGCAGGTC
GCCGTCAACC TGTCGCCGGC GCAATTCCTC AACACCGATC TGGTCGCGTT CGTGCACGAG
GTGCTGTTGC AGACCGGGCT GGAACCGGGC CGGCTGGAAC TCGAAATCAC CGAGGGCGTG
CTGATCGAAG ATTTCGATCG CGGCCTGTCG CTGCTGCGCC GGTTGAAGGC GCTCGGCGTC
CGGGTGTCGA TGGACGATTT CGGCAGCGGC TATTCCTCGC TGACCTATCT GCAGGCGTTC
CCGTTCGACA AGATCAAGAT CGACCGCGCC TTCATCATGA ATCTCGGCCG CAACCCGCAA
TCGGCGGCGA TCGTTCGCGC CGTGATCGGG CTCGGCCACG GCCTCGGCGT CACGCTGGTG
GCCGAAGGCG TCGAGACCCA GGATCAGCTG GACTTCCTGG TCGACGAGTC CTGCGATGCG
GTGCAAGGCT ATCTGATCGG CAAGCCGGCG CCGATCGATC AGTATCGCTG GCTGGTCGGG
CTCGATGCGC TGGAAGACCG CGCCCCGGCG CGCGCACGCG AAGCAGGCTG A
|
|---|
| Protein sequence | MSTCLFSAAA NAAPGFVPAS YIGSIEPEIL WELLIGGFVV AAFTCATALW ATSMLRKQRR
AHRRKNILVD SVLNKLQQGV VIADASGRIV FCNDRYLAMY DLTRAEVTPG MPGRDLLALR
RARGMLDLTN DEFYRNAGLP QGYVAELPDG RCIQVKFSRL ANGGTIATHD DCSELRRMSK
ELSTTKQFLE SVIDNIPVCV AAKSIEDGRY ILANRAFETL SGLSRDKIIG ATADQLYPAR
SAASIREADQ SALQSITGAF QSELTVELGR GDRILASNRV VARNEHGEPE FLIALFEDVT
NRRALSVELE KTKRFLELVI DNIPVALTVQ NTADGRYMLA NRGAEIILNR RREDATGLTT
GEIFNAKEAR LIAERDELAI RKGGLVVEEH PISTAGGLRL FVTRRMTVTD EADQAHYLIK
THVDVTDRRQ TEARMAHMAY HDGLTDLPNR DAFLKSLTQM IEACDNAVDE FAVLSVDLDG
LKEINDVFGH AIGDKLLIEV ARRIEWASRG GVVARLSGDE FGLIIDGPQP AAARDLASMV
AKALAPGFVI DGKTVRIGVT TGVALFPANG TDAASLLANA GAALFRAKAK ARGSVTVFEP
EMDMQIRDRR VLHQDLSNAI RNGEMSLYYQ PQASSTKRVG NNDIVGFEAL TRWRHPTRGF
VPPSEFIPLA EESGLIVELG EWILREACRQ AASWARPLQV AVNLSPAQFL NTDLVAFVHE
VLLQTGLEPG RLELEITEGV LIEDFDRGLS LLRRLKALGV RVSMDDFGSG YSSLTYLQAF
PFDKIKIDRA FIMNLGRNPQ SAAIVRAVIG LGHGLGVTLV AEGVETQDQL DFLVDESCDA
VQGYLIGKPA PIDQYRWLVG LDALEDRAPA RAREAG
|
|---|
| |