Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4636 |
Symbol | |
ID | 6412322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4996390 |
End bp | 4998336 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642714515 |
Product | AsmA family protein |
Protein accession | YP_001993602 |
Protein GI | 192292997 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.86579 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCAAG GAATTAAGCG CCTCGGGGTC TCGGTCGCGG TGCTGATCGC CGCCGCCGTG ACGGGGGCGT TCGCGCTGTC GCTGACGATC GACCGCGGTG CCCTGCGCCA GGCTGTGGAG CAGCAGCTTC GCGCCGCCAC CGGCCTGCAG CTGGTGGTCG ACGGCGATAT CGACGTCACC ATCTTCCCGC GCAGCACCGT GACGTTCAGC AACGTACGCT TGAAGAGCGA CGAGGATGGC GGCGGCGACG CGGCGCTCAG CGTCAAGACG CTGATCACCA ATTTGCGGCT GCTGCCGCTG CTGCTGCGCC GGTTCGAGAT TGCCGATGTG ATGCTCAACC AGCCGTCGAT CCACGTCGTG CGCGATGCCG GCGGCCGCAG CAACTGGACG CCGTTCATCG ACAGCCTGAC CCGGACGATG AAGCCAGGCC TCGACGATCA GGTGTCGTTC TCCGAGATCC GGCTGCAAGA CGGCGAGCTC AGCTATCGCG ATGAAACCGC CGGCGTTCAG GAACACATCG ACGATATCGA CCTGTCGCTG GCGTGGCCGT CGATCTCGCG CACCTTTGCA GCGACCGGTC AGTTTGACTT CCGTGGCGAG CGTCTCGACG GCTCGATCAC CGTGGCCGAC TTCATCGCGG CGCTGCGCGG CGACACTTCG GGCATCAAGC TGCGCCTCGC CGGCGCGCCG ATGAAGATCG CGTTCGACGG CACCATCGCC AACAAAACCA GCCTGTCGCT GATCGGCACG GTGAGTGCCG ACAGCGCGTC GCTGCGCAAC GCGCTGCGCT GGGCCGGCCA GGAGCCTCCG GGCACGGGCG GCTTCGGCCG CTTCGCGCTG AAGGCCCGCG CCAACCTGAT CGGTGCGTCG ATCGCGCTCA CCAACGTCAA TGTCGAGCTC GACAAGAACG TCGCCGAAGG CGTGATGACC TACACGCTCG CCGGCGGCCA TCAGGGCCTG CAGGCGACGC TCGCCGCCGG CAGCATCGAC GTCACGCCGT ATCTGTCGAC GATCCGCCTG CTCGCCAGCG GCGCGCGCGA CTGGAACCGG CAGCTGTTCG ATCTGTCGTC CGCCGATCCT GTCGATCTCG ACATGCGGCT GTCGGCCGCT AAAGTGACGA TCGGCAGCAC CACGCTCGGC CGCACCGCGA TCAGCGCCAA TTTGCGCGGC GGCGCGCTGG CACTCAGCGT CGGCGAAGCC CAGGTGTACG GCGGCATCGC GCAGGGAACG TTCGGCGTCT CGCGCTCCGA CAAGGCCGCC AGCATCAAGG CGCAATTCCA GTTCAACGAC GTCGAACTGC AGACCTGCGC GGCCGACCTG CTCGGCGTGC GCAACCTGTC CGGGCGCGGC AACCTCAGCG TGTCGCTGGA AGCCGAGGGC GCGAGCCCGT TCGGGCTGGC GCAGTCGCTC GACGGCTCGG CGCTGCTCAC CGGCCATGAC GGCGCGATCA GCGGCTTCAA CGTCGAACAG CTTCTGAAGC GGCTGGAGCG CCGGCCGCTC TCCGGCGGCG GCAATTTCCG CAGCGGCAGC ACGCCCTTTG ATAAGCTCAC CGTCTCGGTG CGGTTCGCCG ACGGCATCGC CACTGCCGAC GAAGTGCGGA TCGACGGCCC GACCGCGCGG ATTTCGCTGA GTGGCACCGC TTCGGTGCCG GCGCGCGAAT ACGATCTGAA GGGCGTCGCC AGCCTTGCCG GCGGCTCCGC CGCCAAACCC GGCTTCGACC TGCCGTTTAT CGTGCAGGGG CCGTGGGACG ATCCGCTGAT CTTTCCCGAC CCGGAAAGCC TGATCCGCCG CTCGCCGGCC TCCGCGCCGC TGCTCGATGC CGTCAAGGAT CGCAAGACCC GCGACACCGT CCGCTCGGTG CTCGAACGCA TCACCGGCAA GAAACAGGAC GCCGAACCGC CCGCCGACGC CCCTGCAGCC GCGCAGCCCG AGCCGAAGGC GAACTGA
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Protein sequence | MAQGIKRLGV SVAVLIAAAV TGAFALSLTI DRGALRQAVE QQLRAATGLQ LVVDGDIDVT IFPRSTVTFS NVRLKSDEDG GGDAALSVKT LITNLRLLPL LLRRFEIADV MLNQPSIHVV RDAGGRSNWT PFIDSLTRTM KPGLDDQVSF SEIRLQDGEL SYRDETAGVQ EHIDDIDLSL AWPSISRTFA ATGQFDFRGE RLDGSITVAD FIAALRGDTS GIKLRLAGAP MKIAFDGTIA NKTSLSLIGT VSADSASLRN ALRWAGQEPP GTGGFGRFAL KARANLIGAS IALTNVNVEL DKNVAEGVMT YTLAGGHQGL QATLAAGSID VTPYLSTIRL LASGARDWNR QLFDLSSADP VDLDMRLSAA KVTIGSTTLG RTAISANLRG GALALSVGEA QVYGGIAQGT FGVSRSDKAA SIKAQFQFND VELQTCAADL LGVRNLSGRG NLSVSLEAEG ASPFGLAQSL DGSALLTGHD GAISGFNVEQ LLKRLERRPL SGGGNFRSGS TPFDKLTVSV RFADGIATAD EVRIDGPTAR ISLSGTASVP AREYDLKGVA SLAGGSAAKP GFDLPFIVQG PWDDPLIFPD PESLIRRSPA SAPLLDAVKD RKTRDTVRSV LERITGKKQD AEPPADAPAA AQPEPKAN
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