| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4618 |
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| Symbol | |
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| ID | 6412304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4976775 |
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| End bp | 4980350 |
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| Gene Length | 3576 bp |
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| Protein Length | 1191 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642714497 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001993584 |
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| Protein GI | 192292979 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAACT GGGACTTTCA ATTGCGAGGG GTCGACGATC CCCGGCTCGC GGTGCACGCG
ACCCGGACGT TGCCGGCGTG GCTGTGGTCG ACCGACGGCA GCCGCGTGCT GTGGGCGAAC
CCAGTCGCCG CCCGGCTGTT CGACGCCGCA AACGCCACCG AGCTCGCCGG CCGCAACTTT
CGTCCCGCCG ATCCGCACCG CCGCCAGGTC GCCCAGCTCG CCGCAAAGCT GCCGCCGAAC
GGCGCGACGC GGCTGGAGCG GCTGCGCGGC TTCGGCGCCC CGCTCGGCGC GCTGGTGACC
TGCGCCTGCA CAAAGCTCGG CTTCGCCGAT GGCAGCGCCG GGATCCTGAT CGCCGCCGCA
GAATCGATCG GCCGCCCGAT GCCGCTGATC GACCGGCTGC GCGGCCTTGT CGAAGGCGTC
GACACCCCGA TCGCAGCTTT TGCCAGCGAC GGCCTGTTCG TCGGCTCAAG CGCCGCCGCG
CGCACGCTGC TCGGCTTCCG CAATCTGAGC GAAGCGGGTC TCGACCAGGC CCGTGCCGAC
GCGCTGCGGC TCGGCCGCGC CGAGACGCCG ATCGGACTTG GCCATCTGGT GCTGCAGCGG
GTCGGCAGCG GCGCCGACGT CGGCCTGATC GCACTGCTGG CGCCGGGGAC GACGACCGAG
CCCGGTCAGC AACCAACAGC CAGGTCTCCA GAGCCGCAAC ATCAGGCCGA TTCAGATCCG
CAGCCTGAAA CCGAGTACCC GGCTGCCGTT GCGGCGCCGG TCGAGCCGGC TCCACAAGCC
GAGCCGACTG TCGAAGCTCT GGGGGCCGCT GAGGAAGCTC CAGAGCCGAT CGCGGTCGCG
CCGGATGCAA AAGACGAGTC CAGCGAACCG CAGGCGCCCG TCGAGTCGGA GAGCATTCCG
GAACCCGCAA CGGATCAGCA ACCGGCCGAA ACCGAGGCGG CAGCGGCTGA GCTCGACTAC
GAGACCTTCG CAATCCTGAG CGAAGCGCCC GCCGAATTCA CACTGCTCGA CGACGTCGCA
CCCGCTATCG AGGCGCAGCC TGCATCGACC GAGCAGCAGG TGGACACAGT CGATACCAAC
GCACCGCAAT CGCAACCGGT TGCTCCTGTC GAAGAACCGG CCGCCGAGGT GGTGCTAATC
GATGAGCCTG TCACGCCAGA GCCGACCGGT GAACCTTCGC CATATATCGA GGCCGTCGCC
GACGAGCCTG CAGCACCGGA AGCGGCCGAG ATCGAAGCCC AGCCGGCCTT AGTCGAACAA
TCCGCGGCCC CCGAGCCGGC CGCTCCCGAG CAGGCGGCAA CCGACGCTGC ACCGGCCGTC
GAAACGGCGC CCGAACCACC TGCACCGCGG CGGCATCCGC TGCGCTTCGT CTGGCAGATC
GATTTGGCCG GCCGGCTGGC GATCGCCTCG GATGAATTCC TCCGCCTGAT CGGCCCGCAC
ACCGCCGCCA ATCTCGGCGA GCGCTGGGCC GAGGTCGCCG ACCGGCTCGG GCTCGATCCG
CAAGGTCTCG TCGCGGCCGC ACTTGCCACG CGCCACACCT GGAGCGGCAT CACGCTGCAA
TGGCCGGCGG ACGGCGCCGC GCTACGGCTG CCGATCGAGA TGTCCGGCCT GCCCGTGCAG
GATCAGGGCG GCGCATTTGC CGGGTATCGC GGCTTCGGTG TCTGCCGCGA TCTCGCCGCG
CTCGATTATC TCGCCGCGCT ACGCCGGCAC GGCCCGAACG AACCGCTGCG GCCGCAGCCG
CTGTCGGCCG ATCGGGCGCC GAACTCCCCC GCTTCAGACC AGGCCGCTGC TCTGGACCCG
CTCCTGAACC CCTTGGACAC GCCAGTGGAT ACCCCGAAAA ACGTCCTGCC GTTCCGCGCC
GCCAACGACG CGCGTGCGCC GTCGCTGACT CCGGGCGAGA ACAGCGCCTT CCACGAACTG
GCGCAGCAAC TGGCAGCCCG GCTCGCGAGC GAGACGCCGC CGACCGCAGA CGCTCCATCA
ATTGCCGACG ACGAAGTTGC GCCAGAGCAG GACGCGGCAA CGACCGATAC GCCGGAAGCA
CCGCGCGCCG ATTGGCTCGC GCCCACGCCG GCGAGCGGCG CCAGCGCGCG CGACCGCCTT
CTGCTCGATC TGATGCCCGT CGGCGTGCTG ATCTATCGGC TCGACCGGCT GCTCTATGCC
AATCCGGCGT TCCTGGCACG GATGGGCTTT GCGAGCGTCG CTGCGCTGGA AGACGCCGGC
GGCCTTGATG CGCTGTACGT CGATTCCGGC GTCGGCGATT CCAGCAGTAG TTCGGAGACC
GGCACGCCGA TCACCATCAC CGCCGCGCAA GGTGGCGACG CGGCTCCGAC CGAGGCGCGG
CTGTTCACGA TCGCCTGGGA CGGCGATCAG GCGCTGGCGT TGATCTGCTC GCCCGCCCCT
GCACCGACTG CCGTGCCCGA GCTGCCGTTT GCGCCGACGA CTGCGATCGA GGATGCGCCC
GCCGTGGTCG GCGCCGCGAA CGCCGAGGAG CTCGGCGCGA TTCTCGACAC CACCGCCGAA
GGCGTGCTGA TGTTCGACGA AGCCGGCCAG ATCAGCGCCG CCAACCGCAG CGCCGAAGCA
CTGTTCGGCT ACGACGGCGA CGCGCTGGTG CAGCACAATC TGATCGAGCT GTTCGCGCCG
GAAAGCCGCA CCGCCGTGCT CGATTACTTG GACAGTATCA AGAGCGGCCG CGCCCAGAGC
GTGCTCGACC ACGGTCTCGA AGCGCTCGGC CAGGTACGCG AAGGCGGGCT GTTTCCGCTC
AGCATGACGA TCGGCCGGAC CCGCACCGAT GGGCCGAATT TCTTCGCCGT GTTCCGCGAT
CTGTCGCAGC TCCAGCGCAC CGAAACCGAA CTGAGCCAGG CCAAGCGGCT CGCCGAACGC
GCCACCGGCG CCAAGGCGGA CGTGCTGGCG CGGCTCAGCC ACGAAATCCG CGCGCCGCTC
AACGCCATCA TCGGCTTTGC CGAGGTGATG ATCGAGGAGC GGTTCGGCCC GCTCGGCAAC
GAGCGCTATG TCGACTACAT GAAGGACATC CGTGCCTCCG GGGAGCGCGT CATCGGAATT
GTCGACGATC TGCTCGATCT GTCGCGGATC GAGACCGGCA AGCTCGATCT CGCCTTCGCC
AGCATCAATC TCAATGAGCT GGTCGAACAG AGCGTTGCGG TGATGCAGCC GCGGGCCAAT
CGCGAGCGCA TCATCATCCG GACCTCACTG GCGCATTCGC TTCCGACGGT GGTGGCCGAC
GCACAGGCGC TGCGCCAGAT CATCATGAAT CTGATCAGTA CGTCGATCCA TCTGGCCAAT
GCCGCCGGAC AGGTCATCGT CTCGACCGCG CTCAGCGATG CCGGCGAGGT GGTGCTCCGC
GTCCGCGACA CCGGCAGCCG TCTCAACGAC GACGAACTCG CCGCCGCGCT GCAGCCGTTC
CGCACGCCGA GCGACCGCAC CGAAGCCGCC GGCGTCAGCC TGTCGCTGAC CAAGGCGCTG
GTCGAAGCCA ACCGCGCCAC CTTCCACATC AAGAGCGCGC CGCAATCCGG CACGCTGATC
GAAGTGGTGT TCGCTCACGC GCCGGCAGCG GTGTAA
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| Protein sequence | MTNWDFQLRG VDDPRLAVHA TRTLPAWLWS TDGSRVLWAN PVAARLFDAA NATELAGRNF
RPADPHRRQV AQLAAKLPPN GATRLERLRG FGAPLGALVT CACTKLGFAD GSAGILIAAA
ESIGRPMPLI DRLRGLVEGV DTPIAAFASD GLFVGSSAAA RTLLGFRNLS EAGLDQARAD
ALRLGRAETP IGLGHLVLQR VGSGADVGLI ALLAPGTTTE PGQQPTARSP EPQHQADSDP
QPETEYPAAV AAPVEPAPQA EPTVEALGAA EEAPEPIAVA PDAKDESSEP QAPVESESIP
EPATDQQPAE TEAAAAELDY ETFAILSEAP AEFTLLDDVA PAIEAQPAST EQQVDTVDTN
APQSQPVAPV EEPAAEVVLI DEPVTPEPTG EPSPYIEAVA DEPAAPEAAE IEAQPALVEQ
SAAPEPAAPE QAATDAAPAV ETAPEPPAPR RHPLRFVWQI DLAGRLAIAS DEFLRLIGPH
TAANLGERWA EVADRLGLDP QGLVAAALAT RHTWSGITLQ WPADGAALRL PIEMSGLPVQ
DQGGAFAGYR GFGVCRDLAA LDYLAALRRH GPNEPLRPQP LSADRAPNSP ASDQAAALDP
LLNPLDTPVD TPKNVLPFRA ANDARAPSLT PGENSAFHEL AQQLAARLAS ETPPTADAPS
IADDEVAPEQ DAATTDTPEA PRADWLAPTP ASGASARDRL LLDLMPVGVL IYRLDRLLYA
NPAFLARMGF ASVAALEDAG GLDALYVDSG VGDSSSSSET GTPITITAAQ GGDAAPTEAR
LFTIAWDGDQ ALALICSPAP APTAVPELPF APTTAIEDAP AVVGAANAEE LGAILDTTAE
GVLMFDEAGQ ISAANRSAEA LFGYDGDALV QHNLIELFAP ESRTAVLDYL DSIKSGRAQS
VLDHGLEALG QVREGGLFPL SMTIGRTRTD GPNFFAVFRD LSQLQRTETE LSQAKRLAER
ATGAKADVLA RLSHEIRAPL NAIIGFAEVM IEERFGPLGN ERYVDYMKDI RASGERVIGI
VDDLLDLSRI ETGKLDLAFA SINLNELVEQ SVAVMQPRAN RERIIIRTSL AHSLPTVVAD
AQALRQIIMN LISTSIHLAN AAGQVIVSTA LSDAGEVVLR VRDTGSRLND DELAAALQPF
RTPSDRTEAA GVSLSLTKAL VEANRATFHI KSAPQSGTLI EVVFAHAPAA V
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