| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4574 |
|---|
| Symbol | |
|---|
| ID | 6412258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4927559 |
|---|
| End bp | 4928632 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642714454 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001993543 |
|---|
| Protein GI | 192292938 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAATG CTTCCCTGAT CCCCGCCGGC GATTTCCGCA CCTCCTACGC CGCCGACACC
ACGATCTTCC CGACCAGGAC CAGCCGCAAC GCGGCGATCC TCGGCATCGT GCTGGTGTGC
TTCGCGCCGC TGGTGCTGTC GGGCTATTGG CTCAGCATCC TGATCCAGAT CGGGATCTTC
GGCATCGCCG CGCTCGGGCT GAACATCCTG GTCGGCTTCA CCGGCCAGAT CTCGATCGGT
CACGCCGCGT TCTTCCTGCT CGGCGCCTAC ACCTCGGCCT ATCTGAACAA CCACTTCCCG
ATCCCGGTGT TCTTCGCGAT TCCGCTCGCC GGGCTCGTCA CCGCGCTGGT CGGGCTGGTG
TTCGGCGTGC CGGCGGCCCG GCTGAAAGGT CTGTATCTCG TGATCGCCAC GCTGGCGGCG
CAGTACATCC TGATCGACTT CTTCTCGCGC GCCGAATGGT TCTCAGGCGG CTCGGTGCCG
GCGATGGCCA ATCCGTTCTC GCTGTTCGGG TACGTCCTGC AGGGCGACAA GCAATATTTC
TACGTCGTGC TGGCGTATCT GCTGGTCAGC TACATCCTGG TGACCAACCT GATGCGCACC
CGCGACGGCC GTGCCTTGGT GGCGGTGCGC GACCATTATC TCTCGGCCGA GATCATGGGG
ATCAACCTCA CGAAATATCG GACGCTTTCG TTCGCGCTTG CGGCGTTCTT TGCCGGCATC
GCCGGCGCGC TGTACGCGCA TTACCAGCTC GTCGTCTCCA ACGAGGGCTT CGGCATCGAG
CGTTCGATCC TGTTCCTGGC GATGATCATC ATCGGCGGCA TCGGCTCGAT CTCGGGCACG
CTGATGGGCA CTGCCTTCGT GGTGCTGCTG CCGGAGACGA TGGAATGGCT CAGCAGTGGC
CTGAAAGGCA GCGCAATCGA TCGCGCGCTG GAGCTCAACA ACAACCTGAC CTTCCTGCGC
GAAATCGCAA TCGGCCTGAT TATCATCCTG TTCCTGGTGT TCGAGCCCGA TGGGCTGGCG
CACCGCTGGC GGCAGATCAA GGCGTATTGG AAACTCTACC CGTTCTCGCA TTGA
|
|---|
| Protein sequence | MANASLIPAG DFRTSYAADT TIFPTRTSRN AAILGIVLVC FAPLVLSGYW LSILIQIGIF
GIAALGLNIL VGFTGQISIG HAAFFLLGAY TSAYLNNHFP IPVFFAIPLA GLVTALVGLV
FGVPAARLKG LYLVIATLAA QYILIDFFSR AEWFSGGSVP AMANPFSLFG YVLQGDKQYF
YVVLAYLLVS YILVTNLMRT RDGRALVAVR DHYLSAEIMG INLTKYRTLS FALAAFFAGI
AGALYAHYQL VVSNEGFGIE RSILFLAMII IGGIGSISGT LMGTAFVVLL PETMEWLSSG
LKGSAIDRAL ELNNNLTFLR EIAIGLIIIL FLVFEPDGLA HRWRQIKAYW KLYPFSH
|
|---|
| |