Gene Rpal_4572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4572 
Symbol 
ID6412256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4924516 
End bp4926447 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content66% 
IMG OID642714452 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001993541 
Protein GI192292936 
COG category[I] Lipid transport and metabolism 
COG ID[COG1022] Long-chain acyl-CoA synthetases (AMP-forming) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGACT ATGCCGGCCG CGTCGCGGCA GCCGACACCT TCCCCAAGCT GCTCCGGCTC 
AATGCAAAGG AATTCGGGAC CGAGATCGCG CTGCGCGAGA AAGATCTCGG GCTGTGGCGG
GTGTTCACCT GGGCCGACTA TCAGGCCCGC GTGCACGACT TCGCCCTCGG CATGGTCGAA
CTCGGGCTCA AGCGCGGCGA CGTGATCGGC ATCATCGGCG ACAACCGGCC TGACTGGGTT
TCGGCCGAGA TCGCCACCCA TGCGATTGGC GGCCTGAGCC TCGGCCTGTA CCGCGACGTG
CTCGATGAGG AGGCCGACTA TCTGCTCAAT TACGGCGAGG CCAAGCTGGT GTTCGCCGAG
GACGAGGAGC AGGTCGACAA GTTACTTGGC CTCGCCGACC GCGCGCCGCA TCTGAAGCAC
ATCGTCTATT CCGATCCACG CGGGATGCGG AAATACGACG ATCCGCGCCT CTTGCCGGCC
GATCAACTCG CCAAGCTGGG CCGCGATCGC GCCAGCCGCG AACCGGGCCT GTACGACCGG
CTGGTCGACG CGACGCAGGG CGAAGACGTC GCCATCCTGT GCACCACCTC GGGCACCACG
GCGCACCCCA AGCTGGCGAT GCTGGCGTCC GGGCGCGTGC TGAAACACTG CGCGACCTAT
CTCAGCTTCG ATCCGAAGGG GCCCGACGAC GAATACGTCT CGGTACTGCC GCTCCCCTGG
ATCATGGAGC AGGTTTACGC ACTCGGCAAA GGGCTGCTGT GCCGGATGAA GGTCAACTTC
GTCGAAGAGC CCGACACGAT GATGAACGAC TTCCGCGAGA TCGCGCCGAC CTTCGTGCTG
TTCGCGCCAA GGGTCTGGGA AGGTATCGCC GCGGACGTTC GCGCCCGGGT GATGGACGCC
TCGCCGCTGA AGCAGCGACT TTACAACGCC GGCATGAAGG CCGGGCTGGC TGCGCTCGAC
CAGGGCCAGC ATTCGGCGTT CGCCGACGCG GTGCTGTTCC GCGCGCTGCG CGACCGGCTC
GGCTTCACCC GGCTGCGCTC GGCCGCAACC GGCGGCGCCG CGCTCGGCCC GGACACCTTC
CGATTCTTCC GCGCCATGGG AGTGCCGCTG CGCACGCTGT ACGGGCAAAC CGAACTGCTC
GGCGCCTACA CGCTGCACAA GCCGGACGCG GTCGATCCCG ACACCACCGG CGTGCCGATG
GGCGCCGAGA TCGAGATCAA GGTCCTGAAC CCCGATGTCC AGGGCATCGG CGAAGTGGTG
GTGCGCCACC CCAACATGTT CCTCGGCTAC TACAAGAACC CGGAAGCCTC GACCGCCGAC
ATCAAGGACG GCTGGATGCA TTCCGGCGAC GCCGGCTATT TCAACGGCGC CGGCCAGCTC
GTCATCATCG ACCGCATCAA GGACCTTGCC GAGCTGTCGC ACGGCGAACG GTTCTCGCCG
CAATACATCG AGAACAAGCT GAAGTTCTCG CCCTACGTCG CCGAAGCGGT GATCCTCGGC
GCCGGCCGCG ACATGCTGGC GGCGATGATC TGCATCCGCT ACTCGATCAT CTCGAAATGG
GCGGAGAAGA AGCGGATCGC CTTCACCACC TATTCGGACC TCGCCTCCCG CCCTGAAGTC
TACGAGCTGC TGCGCCGCGA GGTCGAGACC GTCAACGCCA CGCTGCCACC GGCCCAGCGC
ATCAGCCGCT TCCTGCTGCT CTACAAGGAG CTCGACGCCG ACGACGGCGA GCTGACGCGC
ACCCGCAAGG TCCGCCGCTC GGTGATCAAC GAGAAGTACG GCGACATCAT CGACGGCATC
TATAGTGGAC GTAGCGACAT CCCGGTCGAT ACCACCATCA AGTTCCAGGA CGGCACCACC
CAGCGGATCC GCACCACGCT GAGGGTGGTC GACCTCGGCG CCGGCCACGC GCGTGCGGAG
GCAGCGGAAT GA
 
Protein sequence
MMDYAGRVAA ADTFPKLLRL NAKEFGTEIA LREKDLGLWR VFTWADYQAR VHDFALGMVE 
LGLKRGDVIG IIGDNRPDWV SAEIATHAIG GLSLGLYRDV LDEEADYLLN YGEAKLVFAE
DEEQVDKLLG LADRAPHLKH IVYSDPRGMR KYDDPRLLPA DQLAKLGRDR ASREPGLYDR
LVDATQGEDV AILCTTSGTT AHPKLAMLAS GRVLKHCATY LSFDPKGPDD EYVSVLPLPW
IMEQVYALGK GLLCRMKVNF VEEPDTMMND FREIAPTFVL FAPRVWEGIA ADVRARVMDA
SPLKQRLYNA GMKAGLAALD QGQHSAFADA VLFRALRDRL GFTRLRSAAT GGAALGPDTF
RFFRAMGVPL RTLYGQTELL GAYTLHKPDA VDPDTTGVPM GAEIEIKVLN PDVQGIGEVV
VRHPNMFLGY YKNPEASTAD IKDGWMHSGD AGYFNGAGQL VIIDRIKDLA ELSHGERFSP
QYIENKLKFS PYVAEAVILG AGRDMLAAMI CIRYSIISKW AEKKRIAFTT YSDLASRPEV
YELLRREVET VNATLPPAQR ISRFLLLYKE LDADDGELTR TRKVRRSVIN EKYGDIIDGI
YSGRSDIPVD TTIKFQDGTT QRIRTTLRVV DLGAGHARAE AAE