Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4564 |
Symbol | |
ID | 6412248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4915543 |
End bp | 4916775 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642714444 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001993533 |
Protein GI | 192292928 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0603472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCAAAG CTCTGCTCGC AGCCGTCGCT ATCGCGTTGC CGATGTTCGG ATCGGTGGCG GTCGCGCAAG AGACCGTCAA GATCGGCTAC ATCGATCCGC TGTCCGGCGG CGGCGCCAGC GTCGGCGAAG GCGGCCTCAA GACCTTCCAG TATCTGGCCG ACGAGCTCAA CGCCAAGGGC GGCATCCTCG GCAAGAAGGT CGAAATCGTT CCGCTCGACA ACAAGACCAA TCCGCAGGAA AGCCTGATCC AGGCGCAGAA GGCGATCGAC GCCGGCGTGC GCTACGTCAC CCAGGGCAAC GGCTCGTCGG TCGCCGGCGC GCTGTCCGAC TTCCTCACCA AGTACAACGA GCGAAACCCC GGCAAGGAAG TGCTTTACTT CAATTACGCC GCGGTCGATC CGGTGCTGAC CAACGAAAAG TGCAGCTTCT GGCACTTCCG CTGGGACGCC AACTCCGACA TCAAGATGGA GGCGCTCACC AACTACATGA AGGACGTCCC GTCGATCAAA AAGGTCTATT TGATCAATCA GGACTATTCC TTCGGTCAGT CGGTGCGGAC CCAGGCCCGC GCGATGCTGG GCAAGAAGCG TCCGGACATC GAGATCGTCG GCGACGAACT GCATCCGCTG CTGAAGATCA GCGACTTCGC CCCCTACGTC GCCAAGATCA AGGCGTCCGG CGCCGACACC GTCGTCACCG GCAACTGGGG CCAGGACATC GCGCTGCTGC TGAAGGCGGC CGCCGACGCT GGCCTTAAGG TCAGCTGGTA CACCTACTAC GCCGGCGGCG CTGGTGGTCC GACTGCGATC AAGCAGACCG GCCTCAACCA CCAAGTGTTC CAGATTACCG AAGGCTTCGC CAACGTCGAC CACAAGCAGT CGCAGGACTT CGAGAAGGCG TTCCGCGCCA AGGTCGACCT GAGCCTGTGG TATCCGCGCG CTGTGAACGA GATGCGGATG TTCGCGGCCG CGGCTGAAAA GGCCAAGTCG CTGGATCCGG TGAAGGTCGC TCAGGCGCTC GAAGACATGA AGTTCGAAGT GCTGGACGGC GGCGAAGGCA TCATGCGGAA GGACGACCAC CAGTTCTTCC AGCCGATCTA CATCTCGTCG TTCGGCGACA TTCCGGCCGG CCAGTTCGAT GAAGAAAAGA CCGGCTGGGG CTGGAAGCAG GTCGCCAAGA TCGACACCGC CCAGACCATG CTGCCGACCA CTTGCAAGAT GGACCGGCCG TAA
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Protein sequence | MRKALLAAVA IALPMFGSVA VAQETVKIGY IDPLSGGGAS VGEGGLKTFQ YLADELNAKG GILGKKVEIV PLDNKTNPQE SLIQAQKAID AGVRYVTQGN GSSVAGALSD FLTKYNERNP GKEVLYFNYA AVDPVLTNEK CSFWHFRWDA NSDIKMEALT NYMKDVPSIK KVYLINQDYS FGQSVRTQAR AMLGKKRPDI EIVGDELHPL LKISDFAPYV AKIKASGADT VVTGNWGQDI ALLLKAAADA GLKVSWYTYY AGGAGGPTAI KQTGLNHQVF QITEGFANVD HKQSQDFEKA FRAKVDLSLW YPRAVNEMRM FAAAAEKAKS LDPVKVAQAL EDMKFEVLDG GEGIMRKDDH QFFQPIYISS FGDIPAGQFD EEKTGWGWKQ VAKIDTAQTM LPTTCKMDRP
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