Gene Rpal_4564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4564 
Symbol 
ID6412248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4915543 
End bp4916775 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content62% 
IMG OID642714444 
Productextracellular ligand-binding receptor 
Protein accessionYP_001993533 
Protein GI192292928 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0603472 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCAAAG CTCTGCTCGC AGCCGTCGCT ATCGCGTTGC CGATGTTCGG ATCGGTGGCG 
GTCGCGCAAG AGACCGTCAA GATCGGCTAC ATCGATCCGC TGTCCGGCGG CGGCGCCAGC
GTCGGCGAAG GCGGCCTCAA GACCTTCCAG TATCTGGCCG ACGAGCTCAA CGCCAAGGGC
GGCATCCTCG GCAAGAAGGT CGAAATCGTT CCGCTCGACA ACAAGACCAA TCCGCAGGAA
AGCCTGATCC AGGCGCAGAA GGCGATCGAC GCCGGCGTGC GCTACGTCAC CCAGGGCAAC
GGCTCGTCGG TCGCCGGCGC GCTGTCCGAC TTCCTCACCA AGTACAACGA GCGAAACCCC
GGCAAGGAAG TGCTTTACTT CAATTACGCC GCGGTCGATC CGGTGCTGAC CAACGAAAAG
TGCAGCTTCT GGCACTTCCG CTGGGACGCC AACTCCGACA TCAAGATGGA GGCGCTCACC
AACTACATGA AGGACGTCCC GTCGATCAAA AAGGTCTATT TGATCAATCA GGACTATTCC
TTCGGTCAGT CGGTGCGGAC CCAGGCCCGC GCGATGCTGG GCAAGAAGCG TCCGGACATC
GAGATCGTCG GCGACGAACT GCATCCGCTG CTGAAGATCA GCGACTTCGC CCCCTACGTC
GCCAAGATCA AGGCGTCCGG CGCCGACACC GTCGTCACCG GCAACTGGGG CCAGGACATC
GCGCTGCTGC TGAAGGCGGC CGCCGACGCT GGCCTTAAGG TCAGCTGGTA CACCTACTAC
GCCGGCGGCG CTGGTGGTCC GACTGCGATC AAGCAGACCG GCCTCAACCA CCAAGTGTTC
CAGATTACCG AAGGCTTCGC CAACGTCGAC CACAAGCAGT CGCAGGACTT CGAGAAGGCG
TTCCGCGCCA AGGTCGACCT GAGCCTGTGG TATCCGCGCG CTGTGAACGA GATGCGGATG
TTCGCGGCCG CGGCTGAAAA GGCCAAGTCG CTGGATCCGG TGAAGGTCGC TCAGGCGCTC
GAAGACATGA AGTTCGAAGT GCTGGACGGC GGCGAAGGCA TCATGCGGAA GGACGACCAC
CAGTTCTTCC AGCCGATCTA CATCTCGTCG TTCGGCGACA TTCCGGCCGG CCAGTTCGAT
GAAGAAAAGA CCGGCTGGGG CTGGAAGCAG GTCGCCAAGA TCGACACCGC CCAGACCATG
CTGCCGACCA CTTGCAAGAT GGACCGGCCG TAA
 
Protein sequence
MRKALLAAVA IALPMFGSVA VAQETVKIGY IDPLSGGGAS VGEGGLKTFQ YLADELNAKG 
GILGKKVEIV PLDNKTNPQE SLIQAQKAID AGVRYVTQGN GSSVAGALSD FLTKYNERNP
GKEVLYFNYA AVDPVLTNEK CSFWHFRWDA NSDIKMEALT NYMKDVPSIK KVYLINQDYS
FGQSVRTQAR AMLGKKRPDI EIVGDELHPL LKISDFAPYV AKIKASGADT VVTGNWGQDI
ALLLKAAADA GLKVSWYTYY AGGAGGPTAI KQTGLNHQVF QITEGFANVD HKQSQDFEKA
FRAKVDLSLW YPRAVNEMRM FAAAAEKAKS LDPVKVAQAL EDMKFEVLDG GEGIMRKDDH
QFFQPIYISS FGDIPAGQFD EEKTGWGWKQ VAKIDTAQTM LPTTCKMDRP