Gene Rpal_4540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4540 
Symbol 
ID6412224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp4890340 
End bp4891026 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content64% 
IMG OID642714421 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_001993510 
Protein GI192292905 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGGCGAG CAGATCGGTT ACTGGATTTG ATCGCGCGGC TGAAGGACCG GAAGCTGGTT 
GTCGCGGAGC AATTGGCCGA GCAACTGGAA GTCTCCGTTC GCACCGTGTA CCGCGATATT 
GCGACCTTGC AGGCGCAGGG GCTCCCGATC GATGGCCAAG CGGGACTGGG TTACATGCTT 
CGCGGGGACG TGAACCTCCC GGCACTCACC CTCAGCCATG ATCAGTTGGA CGCCGTGTCA 
CTCGGCCTAG CGCTCGTGGA GTGGATCGGC GATGACGACC TCGCGCAGGC AGCCGTCAGC 
GCCCGTGCCA AGATCGACGC GACCTGGGGC GACCAACCGA CCCCGGGGCC ATCGCAGCGC 
CATCTGTTGG CGCGCGAGCT TCCGCACCGC AAAGCTCCGC CCTTCACCAG CTCGATCCGC 
CGCGCCATTC GCGAGCGTCG CATCATCAAG CTAGACTATG CATCCCAGGA CGGAAACCGA 
TCCGCCCGCG ACGTTCGCCC GCTCGGGCTA CGCTCGTTTC ATGCCGGCTG GCTGCTGATT 
GCGTGGTGCA ATCACCGCGA CGCGTTCCGG GTCTTCCGCC TCGACCGCAT TCTGGCTTGC 
GAGCTTTCAA AGCAAACCTT CCCGTTCGAG GCGGAACGTG AGTTGTCGGC TTACATTTCG 
GAGCGGGGGA AACCAGCACC ATCGTAG
 
Protein sequence
MRRADRLLDL IARLKDRKLV VAEQLAEQLE VSVRTVYRDI ATLQAQGLPI DGQAGLGYML 
RGDVNLPALT LSHDQLDAVS LGLALVEWIG DDDLAQAAVS ARAKIDATWG DQPTPGPSQR 
HLLARELPHR KAPPFTSSIR RAIRERRIIK LDYASQDGNR SARDVRPLGL RSFHAGWLLI 
AWCNHRDAFR VFRLDRILAC ELSKQTFPFE AERELSAYIS ERGKPAPS