| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4517 |
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| Symbol | |
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| ID | 6412201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4863121 |
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| End bp | 4869081 |
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| Gene Length | 5961 bp |
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| Protein Length | 1986 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642714398 |
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| Product | conserved hypothetical protein, putative DNA helicase |
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| Protein accession | YP_001993487 |
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| Protein GI | 192292882 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCTG AAAGTGAATT GGCCGAGCTT GTAGCTGACG GTGCGAGTTC GAGTGTGCAA
GACCAAACCG TACAGATCGA AGCCAATCTG GCTGAAAAAT TCACCTTCGC CTCGCATCAG
AATTCGATTC CCGTCCTCCG CGCGGTTGCG ATCAGCAACG CGAGCCAAGA GCCGCTTGAG
AGGCTTCGTC TGGAGCTGGT CTCAAGTCCC GCATTCCTGC GGCCAAAAAC CTGGACGATC
GACAGGATTT TCGCGGGCGA CCGACATACG CTCAGCGACC GACGCGTGGA TCTGGATCCC
TCTTATCTGG CCGGCCTTGA TGAAGCCGAG ACAGGTGACA TCACCTTGCG GCTGCTGCAG
GCAGATACCC TCATTGCTGA GGTCGTCCTT CCAGTGCGCC TGCTGGCCCG TGATGAATGG
GGCGGCGTGT CTGACATGGC ACAGCTCCTT CCGGCGTTTG TGATGCCGAA CGACCCGACA
ATTCACAGGG TGCTGCGATC GGCTGCCGAA CGCCTTTCCT CGCATGGCCA CTCATCGGCT
CTGGACGGCT ACCAGAGCAA CGACCCGAAG CGGGCCTACA TGCTGGCAGC AGCGATCTAT
TCGGCGATCG TGGCACTGGG ACTTCACTAC GCCGAGCCGC CCGCCAGTTT TGAGAAGCGC
GGGCAGAAAG TGCGCGGACC GAGCAAACTG ATCCAAGACC AGCTCGGGAC TTGCCTTGAC
GTTACGCTTC TGTTCGCTGC GGCCCTAGAG GCCGTCGGTT TGAATCCTGT CACCGTCTTG
CTCGACGGAC ATGCGTTTGT CGGTGTGTGG CTCGTTAAGC GCACCCTGCC GAAAACCATC
GAAGACGATG TTAGCGAACT CCGCAAGGCA ATCGCTGCCC GCGAGTTTAT CGTGTTCGAA
ACGACCGGGG TCACGCACCG ACCTGCGATG ACGTTCGAAC AAGCCAGGAA AATCGGCGAA
GACAAACTCA AGGAAGAAGC GCTGCAGCCC TTCGTGGCCG CAGTCGACGT GGCGCGCTCG
CGCTCGTCCG GCATCCTGCC ATTGGCATCC CACACGCCGA GGACGGAGGC GGTGGTCGAT
GAGGAGGAGA CGTCCGCCGA ACTCCCTCTG CCCCCCGAAC CAGACATTCT CTCGCCGGCC
GACCAAGTCG ACGAGAAGCC GACCACGCCG GAGGGACGTA TCGAGCGGTG GCGATCTCGG
CTACTCGATC TATCGCTCCG CAACCGCCTG CTGAACTTTT CCGAGGGCAA ACGGGCGATC
CCCTTTGTAT GCCCCGATGT CGCCTATCTC GAAGATCGTC TGGCCGAGGG AGCTTCGATC
AAGATCATTT CGCTGCCCCA ACAGAATCCA TTGGGCGATC GAGACGCCTC CCTGCATCGC
GATCGGCGCG GCGACGACCT ACATCGGACG TTCGCGGCTG AAGCGTTGAA GCGAGATGAA
CTCTCCTCCA AGCTCGAGCC CAAGGATCTG TCGGCCAGGC TGACCGATTT GTATCGTCAG
GCTAAGAATG ACCTGACCGA AGGTGGTACC AATACGCTTT ATCTCGCTGT CGGAATCCTG
AGATGGAAGA AGACGCCGGC CGACGAGAGA ACCTATCGCG CACCGCTACT GCTGCTGCCG
GTGAAGCTCG AACGTTCGGG CGCGTCCGAT CGCTTCCGCC TGAAATTTCA CGAAGACGAG
CCACAGCTGA ATGCGACCTT GCTGCAATTC TTGAAGCGGG ATTTCGACGT CTCGCTTCCG
GACTTTCGCG AAGGCCTTCC GAAGGACGAC AAAGGCATCG ATGTTTCGAA GGTGCTCGAC
AGCGTGCGCC GCACCGTGCG CGACGTCCCG GGCTTCGAAG TCGTCGACGA CATTGCGCTG
TCGACTTTCT CTTTCGCCAA ATATCTGATG TGGAAGGATC TGACCGACCG CGTCGCGGCG
CTGCGTCAAA ATCGCGTCGT CAAACACCTG ATCGACAATC CCGATCGCAT CCTCGACGGC
GCCGACCAGC CCTTTCCGGA CGAGGGCGAT ATCGACCGGC AGTACGCCTC GGCCGATCTG
GTGCTGCCGC TTCCGGCGGA CTCGTCTCAG ATCGCCGCAT GCCTCGCTGC CGCGCAGGGG
CGGGACTTCG TCATCATCGG TCCGCCCGGC ACCGGCAAAA GCCAAACGAT CGCCAATATG
ATCGCGATGT GTCTGGCCGC AGGCAAGACC GTGCTGTTCG TCGCAGAGAA GACGGCGGCT
CTCGACGTCG TGTATCGGCG TTTGCGGGAG CACCGGCTTG GCGACCACTG CCTCGAGCTG
CATTCCAGCA AAGCGGATCG AAAGCACTTC TTCAGCCAAC TGAAGAACTC GTGGGAGACG
CGCGCGGCCA ATCGCGAAAC CCAATGGGTC ACGCTCAATC ATCGACTGCA GATCCGGCGC
GACGAGCTGA ACGCTTACGT CGATGCGCTG CATCGCCAGT CACCGAATGG ACTGACACCG
TACGCCGCGA TCGGCATCGC GACTCTCGGA CAAGACGACT ATGCGCCGAA GTTCGAGTGG
ACAAGCAAGG ACACCCACGA CGCGAAGGCC TACGCGGAAC TGCAAGACCT AGCCGGCGAC
CTCGGTCGGA CTTATGCGGC CGTGACTGTC CGTCCCGTGC TCCGTCTGCT GCATGTTGAA
GAATGGACCA ATGCCTGGCA GGAAAAGCTG CTGACGGCAG CACGGGCTCT CGCGCGGGCC
GCCACTGCAG CGCGTACGGC GCTAGCCGGG ATCAGTCCCC GCCTCGGGCT CGATGGCTTA
CAGGACTGCC GTGCCGACGG CTTGAAATAC TTCGCCGACC TCGCGCAGGA TCTGATCGCA
ACCTCCGGCG AAAATCACAC GATCATTCTG CATCGCGACT TCGCCGCGCT GGCCCGCGCA
CTGTCCGAGC TTGAAACAGC GATTTCTGCC TACCGCCATA GTGAAAGCGG CCTGTCGGTC
CGCTACGCGC CCGACACCGT GGTACGCATT CCGATCGCCG AGATCGAGCG CGACTGGCAT
GAAGCGAAGG CAGCCATGTG GCCGAAGTCC TGGCTCGGGA CGCGGCGCGT GAAACGGCTG
CTCGGATCAT ACGCCGGAAC CAAGACGACA GACCCCGCCA CCGACATTGA ACTGCTCCGG
GATCTGCAAG CAAAGCTTCA ATCGATCCAA AGCAATGCGA TCGCCCAAGC CCCGCTGGCC
TTCAATGGCC TCGATACCGA CTGCAAGGCG CTGACAGACC ATCTGGAAAA GGCGGAACGG
CTACGGACCT CGCTGGTTCA GCTTGGTGAG TTTGCCGGCG ACGTGCAAAA GGTCGCGGCC
AGCATCGCCG CCAACCTGAA GGGACAGGTC AACCAGCCGC AGCTTTCGGC CGCCAGGGAC
TATCTGGCCC GCTACCAGGA ATTGAAGGCT TGCATCGCCA ACTTCGAAGA GGCGGCCGGT
CTGCCGCTCG ACCGCAACGA CGATGACTTT CTCAGCACCG TCATTCGGCA GATGGACGAG
ATCGAACACG CCCGCACGTT ATTCCGCGAT TGGTCGTCGT GGTGCTTGGT CCGCAAGCGC
GCCATCGCAC GCGGACTGGC TCCTCTGGTG CAAGCTATTG AGACCGGCGC CGTTCCGACC
GACCGCAGCG TGTCGGCATT CAGGTTTGGC TACGCGCGCT GGTGGCTGCC GCTTGCGATC
GACGATAGCG CAGAGCTCCG GAACTTCCGC CGCTTTGCAC ACGAAAATGC GGTCGAGGAT
TTCAACGCGG TCGATGACCT CGTCCGCGCC CACGCCAGCG ATAAGATCGT CAGTGCTTTG
GCGCATGGTC TTCCGTCCTC CGAGTCGGTG CCTCGGCAAT CCGAACTGGG ACAGCTGCGG
CATCAGATGG GCCTGAAGCG GCCAAGCCGT TCGATCCGCG AGATGATCTC CGCGATGCCG
GAGAGCTTCG GCAAGCTCGC GCCGTGCGTG CTGATGTCAC CGCTGTCGAT CGCGCAGTAT
CTTCCACCCG ATCAAGCGCT GTTCGACATC GTGATTTTCG ACGAGGCATC ACAGATCGCC
ACCTGGGACG CGGTCGGCGC GATCGCGCGC GGCCGGCAGA CAATCATCGT GGGCGATCCT
AAGCAATTGC CGCCGACGAG CTTCTTCGGT CGGGCCGACG ATCAAGATGA CAGCGTGCCT
GAGTTCGATC GGGATCTCGA GAGTATCCTC GATGAAACGC GGGCTTCAGG GCTCCCTGTT
CGGCACCTGC GGTGGCACTA CCGAAGCCGC CATGAGTCCC TCATCGCGTT CTCCAACTGG
CACTACTACG ACAATCATCT CGTCACTTTC CCAAGCCCGG TGACGGAGGA TCGCGCGGTC
TCGCTGAACC TTGTTCCGAC CGGAATCTAC GATCGTGGCA AGAGCCGCAC TAATCGTGAA
GAAGCACGCG CGATCGTCAC CGACATCAGA ATCAAGCTGA AGAGCTGGCT CGGCTTGCCG
GAGGCCGAGC GCCCAACTGT CGGCGTCATC ACGTTCAATG CCCAGCAGCA GGCGTTGATT
CAGGACCTGC TCGACGAGGT GTGCCGCGCG GATCCCGACC TTGAATGGTT CTTCTCCGAC
GACCGGATCG AGCCGGTGAT CGTGAAGAAT CTCGAGAACA TCCAAGGCGA CGAGCGCGAT
GTGATCTACT TCTCGATCGC CTTCTGCCGC GATGCCGCCG GGAAGCTACC GATGAATTTC
GGCGCCATCA ACAACGACGG CGGCGAACGG CGACTGAACG TGGCGGTCAC GCGCGCCCGA
AGTGAACTGA AAGTGTTCTC GGGCATCCGG GCCGACGACA TCGATCTCGA CCGCAGCAAA
GCAATGGGCG TGCGTCATCT GAAGGCGTTT CTCGACTACG CGGCGCGTGG CGCGATCGCA
CTGCCCGCGC AGGACGAGGG ATCGCTCGGA GAGACCGAGT CTCCATTCGA GCAGGCAGTG
GCGATCGCGC TCGAAGCCCG CGGTTGGCGG GTGGTGACAC AGGTCGGTGT ATCCGGCTTC
CGGATCGATC TTGGCATACG CCACCCCGAT CATGCGGGGC TGTATCTCGC CGGCATCGAA
TGCGACGGCG CCACTTACCA TAGTTCCGCG ACGGCCCGGG ACCGCGACAA GGTGCGCGAG
CAGGTGCTGC GTGGTTTGGG CTGGAATATC CTGCGGATCT GGTCGACGGA CTGGTGGTTC
AACGCGACCG ACGCGATCGA GCGTATCCAT ACAGCCTTGA ACGATTTGTT GGCGGTAAGC
CGCGCCGACC TAGCCAATAC TGAATACGCC GGTGAATCGG CGGACGGCAG CACCGGCAGC
TTTGCGGACG AGATCGACCT CTCGGTCGAT ATCTTCGACA CACAACAGTC GGAGGGGCAG
AAGAAAGACG GTGAGCCCCC CTGCGCCGCT GACGACGAAG CGGAGCCTTC GCCTTCGCCC
GCGCAGCAGG TGAGCGAATC TCGGATTGCG TCGGTCGGTC ATGCCGCTAA AGAAAGCCGC
ACAACTTTCC GCATTGTCGA TCTCTCCGGC TTCAAGACGG AGGCGGATCG CTTCTTCGAG
TTTTCGTACC GTCCGACGAT CGAGGCACTG ATCGATGCCG TGATGACCGC CGAAGCTCCG
GTGAGGGAGG ACGTCCTCGC TCAGCGCATC GCACGGGCGC ATGGCTGGCT GCGGACGGGC
GCGCGCATTC GCGATCAGGT GTCACGTCAC CTTGAGAACT ACGAGCAGAC GAACGAAACG
CCCGGCTCGT TCCTGTGGCT GCCGGGCACG GTGACTGAAC GTCTTACTTT TCGCAGGCCT
CACGGCCCCG ATCACCGCCG ACCTCTGGCT GAAATCGCTC TCGCGGAATT GGTCGACTTT
ATCCTGGCGC ACACGCATGC GCTCGACGAG GACGACCCGC CCCTGGTCTA TGCCCGACTT
CTGGATATCG AAAGACTGGC GGCTCCATCG CGGGAGCGGC TTCAGGAGGC GATCGAGAAA
GCCCTAACAC TGAAGGACTG A
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| Protein sequence | MKAESELAEL VADGASSSVQ DQTVQIEANL AEKFTFASHQ NSIPVLRAVA ISNASQEPLE
RLRLELVSSP AFLRPKTWTI DRIFAGDRHT LSDRRVDLDP SYLAGLDEAE TGDITLRLLQ
ADTLIAEVVL PVRLLARDEW GGVSDMAQLL PAFVMPNDPT IHRVLRSAAE RLSSHGHSSA
LDGYQSNDPK RAYMLAAAIY SAIVALGLHY AEPPASFEKR GQKVRGPSKL IQDQLGTCLD
VTLLFAAALE AVGLNPVTVL LDGHAFVGVW LVKRTLPKTI EDDVSELRKA IAAREFIVFE
TTGVTHRPAM TFEQARKIGE DKLKEEALQP FVAAVDVARS RSSGILPLAS HTPRTEAVVD
EEETSAELPL PPEPDILSPA DQVDEKPTTP EGRIERWRSR LLDLSLRNRL LNFSEGKRAI
PFVCPDVAYL EDRLAEGASI KIISLPQQNP LGDRDASLHR DRRGDDLHRT FAAEALKRDE
LSSKLEPKDL SARLTDLYRQ AKNDLTEGGT NTLYLAVGIL RWKKTPADER TYRAPLLLLP
VKLERSGASD RFRLKFHEDE PQLNATLLQF LKRDFDVSLP DFREGLPKDD KGIDVSKVLD
SVRRTVRDVP GFEVVDDIAL STFSFAKYLM WKDLTDRVAA LRQNRVVKHL IDNPDRILDG
ADQPFPDEGD IDRQYASADL VLPLPADSSQ IAACLAAAQG RDFVIIGPPG TGKSQTIANM
IAMCLAAGKT VLFVAEKTAA LDVVYRRLRE HRLGDHCLEL HSSKADRKHF FSQLKNSWET
RAANRETQWV TLNHRLQIRR DELNAYVDAL HRQSPNGLTP YAAIGIATLG QDDYAPKFEW
TSKDTHDAKA YAELQDLAGD LGRTYAAVTV RPVLRLLHVE EWTNAWQEKL LTAARALARA
ATAARTALAG ISPRLGLDGL QDCRADGLKY FADLAQDLIA TSGENHTIIL HRDFAALARA
LSELETAISA YRHSESGLSV RYAPDTVVRI PIAEIERDWH EAKAAMWPKS WLGTRRVKRL
LGSYAGTKTT DPATDIELLR DLQAKLQSIQ SNAIAQAPLA FNGLDTDCKA LTDHLEKAER
LRTSLVQLGE FAGDVQKVAA SIAANLKGQV NQPQLSAARD YLARYQELKA CIANFEEAAG
LPLDRNDDDF LSTVIRQMDE IEHARTLFRD WSSWCLVRKR AIARGLAPLV QAIETGAVPT
DRSVSAFRFG YARWWLPLAI DDSAELRNFR RFAHENAVED FNAVDDLVRA HASDKIVSAL
AHGLPSSESV PRQSELGQLR HQMGLKRPSR SIREMISAMP ESFGKLAPCV LMSPLSIAQY
LPPDQALFDI VIFDEASQIA TWDAVGAIAR GRQTIIVGDP KQLPPTSFFG RADDQDDSVP
EFDRDLESIL DETRASGLPV RHLRWHYRSR HESLIAFSNW HYYDNHLVTF PSPVTEDRAV
SLNLVPTGIY DRGKSRTNRE EARAIVTDIR IKLKSWLGLP EAERPTVGVI TFNAQQQALI
QDLLDEVCRA DPDLEWFFSD DRIEPVIVKN LENIQGDERD VIYFSIAFCR DAAGKLPMNF
GAINNDGGER RLNVAVTRAR SELKVFSGIR ADDIDLDRSK AMGVRHLKAF LDYAARGAIA
LPAQDEGSLG ETESPFEQAV AIALEARGWR VVTQVGVSGF RIDLGIRHPD HAGLYLAGIE
CDGATYHSSA TARDRDKVRE QVLRGLGWNI LRIWSTDWWF NATDAIERIH TALNDLLAVS
RADLANTEYA GESADGSTGS FADEIDLSVD IFDTQQSEGQ KKDGEPPCAA DDEAEPSPSP
AQQVSESRIA SVGHAAKESR TTFRIVDLSG FKTEADRFFE FSYRPTIEAL IDAVMTAEAP
VREDVLAQRI ARAHGWLRTG ARIRDQVSRH LENYEQTNET PGSFLWLPGT VTERLTFRRP
HGPDHRRPLA EIALAELVDF ILAHTHALDE DDPPLVYARL LDIERLAAPS RERLQEAIEK
ALTLKD
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