| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4440 |
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| Symbol | |
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| ID | 6412124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4768246 |
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| End bp | 4770048 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714322 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_001993411 |
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| Protein GI | 192292806 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.406956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCTCT CCGACTACGT CATCGATTTT CTGGCGCGGC GCGGCGTCAC CCATGTGTTC
GGCATTTCCG GCGGCGCCGC GGTGCACATG TTCGACTCCG CCCAGCGTCA CCCTGACGTC
ACGCCGATCT TTCCCCAGCA CGAGCAGGCT GCCGCGATCG CTGCCGACGG CTACGCGCGC
GCCACCGGCA GGCTCGGCGT CGCCATCACC ACCTCGGGTC CCGGCGCCAC CAATCTGCTG
ACCGGGGTGT GCTGCGCCTA CTACGACTCC GTGCCGACGC TGATGATCAC CGGGCAGGTC
GCGACCCATC GGCTGAAGGG CAAGAACCAG ATCCGTCAGC TCGGGTTTCA GGAGACCGAC
GTCACCTCGA TCTTCGCCAC GGTGACTAAA TACGCGGTAC AGATCTCCGA CCCCACCACG
ATCCGTTATC ATCTGGAGAA GGCGTACCAT CTCGCGTTCG AGGGGCGGCC CGGTTCGGTG
CTGATCGATC TGCCGGACGA TCTGCAACGC GCCGAGATCG ATCCCGACAT GTTGCCGGGC
TTCACGCCGG AGCCAGAGGC CGCATCGAAC GATCTCGACG CCGAGATCGC GGCGCTGCTG
CCGCTGATTG CGCGGGCCGA GCGGCCGGTG CTGGTGCTCG GCGGCGGGCT GTCGACGCCG
CGGATCGGGT CGATGCTGGA TCACCTCGTC GACCGCCTCG GCATGCCGGT GCTGACCACC
TGGGCGGCGA CCGATCTGAT CGCAGCCGAC CATCCGCTGC GGGTCGGGCC GTTCGGCGTC
TATGGGCCGC GGCTCGGTAA CTTCACGGTG CAGAACGCCG ACCTGATCCT GTGCCTCGGC
AGCCGGCTGT CGCAGAACGT CACCGGCGGC ATCCTGCCGT CGTTCGCACG CGAGGCGACG
ATCGTGATGG TCGACGCCAG CCGCGGCGAG ATGGACAAGT TCGACGACCG CGGCATCCGC
ATCGCGACGC GGATTGCAGC GCGGCTCGAC GCCTTCGTGC CGAAGCTGCT CGCCGCGATC
GAGGCGGCGC CGCCGCGCGA GGCTTGGCTG AACACCATCG GGCATTGGCG CAGCGCGTTG
CCGGATGATC GGCCTGGCCC TGCGCCCGAC AATGCCGGCT TCGTCGACGC CTACGACTTC
ATCGACAAGT TGAGCGACGC TGCGCCCGCC GACGAACTGC TCTATGTCGA CACCGGGGGC
AACCTGACCT GGACCTGCAA CGGCTTCCGC ATCAAACGCG GGCAACGGTT GATCTCGGAC
TGGAACAACA CCGCGATGGG CTACGCGCTG GCGGCGGCGA TCGGCGCTGC GGTGCAGGCG
AGGGGCGGTG TCACCTGCAT CGTCGGCGAC GGCGGTTTGA TGCTGTCGCT GGGTGAGTTG
GCGCTGCTCA AGCGGCACGA ACTGCCGATG CGGCTGATGC TGTTCAATAA TCACGGCCAT
GGCATCCAGA AGCAGACGCT GGAGACCTGG CTCGATGGCC ACTATGTCGG CGTCGATGCG
CCGAGCGGCC TGTCGTTCGT CGACTTCCGC AAAGTTGCCG AAGCGATGGA TCTGCCGGTG
GTCACGATCA GCCGCAGTGC CGACATTGCT AGCCAGCTCC GCGACGTTTA TGCGCGCAGA
GGCCCGGTGT TCTGCAACGT CGAAATCAAC CCGGCGCAGA AATTGTACCC GGTGCTGAAG
TTCGGCGCGC CGCTGGAGAG TCAGCTGCCG TCGATCGACG ATGAGCTGAT CAAGCGCGAA
ATGTTGATCG CGCGGTTTGT CCCCGGCTCC GCGCCAAAGC ACAGCGGCGG CGCGGGCGTA
TAG
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| Protein sequence | MKLSDYVIDF LARRGVTHVF GISGGAAVHM FDSAQRHPDV TPIFPQHEQA AAIAADGYAR
ATGRLGVAIT TSGPGATNLL TGVCCAYYDS VPTLMITGQV ATHRLKGKNQ IRQLGFQETD
VTSIFATVTK YAVQISDPTT IRYHLEKAYH LAFEGRPGSV LIDLPDDLQR AEIDPDMLPG
FTPEPEAASN DLDAEIAALL PLIARAERPV LVLGGGLSTP RIGSMLDHLV DRLGMPVLTT
WAATDLIAAD HPLRVGPFGV YGPRLGNFTV QNADLILCLG SRLSQNVTGG ILPSFAREAT
IVMVDASRGE MDKFDDRGIR IATRIAARLD AFVPKLLAAI EAAPPREAWL NTIGHWRSAL
PDDRPGPAPD NAGFVDAYDF IDKLSDAAPA DELLYVDTGG NLTWTCNGFR IKRGQRLISD
WNNTAMGYAL AAAIGAAVQA RGGVTCIVGD GGLMLSLGEL ALLKRHELPM RLMLFNNHGH
GIQKQTLETW LDGHYVGVDA PSGLSFVDFR KVAEAMDLPV VTISRSADIA SQLRDVYARR
GPVFCNVEIN PAQKLYPVLK FGAPLESQLP SIDDELIKRE MLIARFVPGS APKHSGGAGV
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