| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4377 |
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| Symbol | |
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| ID | 6412061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4708497 |
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| End bp | 4710422 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714259 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_001993348 |
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| Protein GI | 192292743 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.667583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCGG GTGTCGTGGC GATCGGTCTC GTCGGTGCCA CGTCGGTATC GGCGCAAGCG
CAATTCACCG GCATCTACGG CTTTGGCGAC AGCTATGCCG ACACCGGCGC GGCACCCGGT
GGTGCGTTTC GTCTCGCCGG CGCGCCTGCA GGCTGCCAGT CACTGCCGCT GCCCGACAAC
TGCCGGTTCA CCGGCGGGAC CAATTTCGTC GAGACGCTGC AATCGATCTA CGGTCTGCGC
GGCCTGACCA ACTATGCGAT CGGTGGCGCG CTCACCGACA ACACCAATAC GCTCAACAGT
GAGATCCCCG GTCTGGTGCC GCCGTTGCCC GGCTTCGTCT ATGAGCTTGC CCGGCTCGCT
CATGACGGGG GCAGGTTCAG CAGCACCGAT CTGGTCACGG TGTCGATCGG TGGCAACGAT
TCGTCGCTCT TGACCAGCAG CGTCGCCAGC GCCACCGCGC TTGGCATCGC GGCCGCGGGG
CGGGCCGTCA ACGGCACCGG GGTGGCTCCG CTGTCCGGGA CCTATGACGG CGTCACCTAC
AACAACGTCG TCACTTCCGG AGTGCATCAG CTGGTCGACG CCGGCGCCCG TAACATCGCC
TGGCTCAGCG CCGGAAATTC CAAGTACTTC CCGGTGCCGG AGGGCGGTGG GGCCATCGGC
GACGCCGCCC GCGACGCCTT TGCCCACACC TATTATCAGC AGATCCAGCT CCTGCTCCGG
CCGATGGCCC TGGCCGGAGT GCGCATTTTC CTGTTCGACT TCGAAATCCT GCAGGCGCGG
ATCTACGCCA ATCCCGCCCA ATACGGCTTT GCTGCCGACC CGCTATGCCA GCAGAGTTCG
GCGCCGCACA GTCCCACCTG CTTCTATCAG AACGCGGTGC ATCCGACCGC CGCCGCGATG
ACACTGATCG GCAACTACAT GGCCAATCAG ATCGATGCGC CCTCGACCGT GGCGCCGCAG
GCGGGGATCG CCAACGCCGT GATCACCGGC TTCACGGCCT CTGCGCTCGA CCGCCTCGAC
GCCAGCCGTC GCTTCCAGCC GTTCGGTCTC GGCGCCGCGA TGGCGGCGAT GCCGACCAAG
GCGGCGATGC CGGCGGCCCC GGAGGATCGC TGGTCGGTGT ACGGCGACGT CAGCTATGCC
GGCGGCAATC GCGATCGGCA GTTCTATGCG TCGGGCTACG ACTACACCTC CACCGGCGGC
TATCTCGGCG TCGAGTATCG GCTCGATCCG AACTGGCGCG TCGGCGGCGT GTTCGGCTAT
GCGCAGCCCG AGGTCAAACT CGGCGTCCAG GACGCCCGCA ACCGGATCGA TGCGTTCCAG
TTCGCGGGCT ACGGCTCCTA CGCCGATGCG CACTGGTTCG CCGACGCCAT CGTGGCCTAT
GGTCGGCACG AATTGTCGCT CGAGCGTCGC GGCATCATCG ACATGATCCG CGGCAGCACC
CATGCCGACG TGTTCACCGC CGCCGCCAAG ACCGGCTATC TGTTCGACGC CGGCAAGCTG
CGCGTCGGGC CGATCGCGAG TCTGCAATAC AGCTACGCCA CCATCCAGGG CTACACCGAG
ACCGGCGACG TGCTGCTGGC CATGATGGTG GACCGGCAGA CGCTCGACAG CCTCACCGGC
GATGCCGGCG TGCAGTTCCG ATATCCGCTG CAGCTCGGCA GCGGCATCTA CACCCCGTTC
GTCAACCTCA CCGCCGCGCA TGATTTCCTC GGCGGCCACA GCGTCACCAC CACGCTGGTC
ACGGCCCCGT TGCTGCCGAT CCTGACGCCG GTGTCGGCCG ACGGCGGCAC TTACGGCCGC
GTCGCCGCCG GCGTCTCGGC GCTGGTGACC GACAAGGTCT CCGCCACCGT CACAGGGACC
ACCAGCTTCG CCCGCCGCAG CGGCAACGAC GCCGGCGTCA GCGGCGGCCT CAAGGTCGCG
TTCTGA
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| Protein sequence | MVAGVVAIGL VGATSVSAQA QFTGIYGFGD SYADTGAAPG GAFRLAGAPA GCQSLPLPDN
CRFTGGTNFV ETLQSIYGLR GLTNYAIGGA LTDNTNTLNS EIPGLVPPLP GFVYELARLA
HDGGRFSSTD LVTVSIGGND SSLLTSSVAS ATALGIAAAG RAVNGTGVAP LSGTYDGVTY
NNVVTSGVHQ LVDAGARNIA WLSAGNSKYF PVPEGGGAIG DAARDAFAHT YYQQIQLLLR
PMALAGVRIF LFDFEILQAR IYANPAQYGF AADPLCQQSS APHSPTCFYQ NAVHPTAAAM
TLIGNYMANQ IDAPSTVAPQ AGIANAVITG FTASALDRLD ASRRFQPFGL GAAMAAMPTK
AAMPAAPEDR WSVYGDVSYA GGNRDRQFYA SGYDYTSTGG YLGVEYRLDP NWRVGGVFGY
AQPEVKLGVQ DARNRIDAFQ FAGYGSYADA HWFADAIVAY GRHELSLERR GIIDMIRGST
HADVFTAAAK TGYLFDAGKL RVGPIASLQY SYATIQGYTE TGDVLLAMMV DRQTLDSLTG
DAGVQFRYPL QLGSGIYTPF VNLTAAHDFL GGHSVTTTLV TAPLLPILTP VSADGGTYGR
VAAGVSALVT DKVSATVTGT TSFARRSGND AGVSGGLKVA F
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