| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4368 |
|---|
| Symbol | |
|---|
| ID | 6412052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4692239 |
|---|
| End bp | 4693990 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642714250 |
|---|
| Product | potassium efflux system protein |
|---|
| Protein accession | YP_001993339 |
|---|
| Protein GI | 192292734 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.22742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCACA ACGGAACGAT GGAGCACAAC ACCCCACTGA TTTCCACCAT CGTGGCCGGC
TTGGTGCTGG CTTTTGCCTT CGGTGTCGCG GCCCAGCGGC TGAAAATCTC GCCGCTGGTC
GGCTATCTGC TCGCCGGCGT TGTGATCGGC CCATTCACCC CCGGCTATGT GGCCGATCAG
AGCCTCGCCA ACGAGCTCGC CGAAATCGGC GTCATCCTGC TGATGTTCGG CGTCGGCCTG
CATTTTTCAT TGAAGGATTT GCTCGAAGTC CGGGCGATCG CGATTCCCGG TGCGGTGGTG
CAGATCGGTG CTGCAACCTT GCTCGGCGCC GGGCTTGGCC ATGCGCTGGG CTGGCCGTTC
GGCGCCGGCC TGGTGTTCGC CTTGGCGCTG TCGGTGGCGA GTACCGTGGT GTTGCTCCGC
GCGCTGCAGG AGCGCCGTCT GGTCGACAGC GAGCGCGGCC GGATCGCGGT CGGCTGGCTG
ATCGTCGAAG ACATCGCGAT GGTGCTGACG CTGGTGCTGC TGCCGGCGGT CGCGGGGCTG
CTCAAGGGCG AGGCTACCAC CGCCAACTTG GAGACGGTGC TGTGGCCGGT GGCGCTGACC
CTCGGCAAGG TGTTCGCCTT CATGGTGTTC ATGCTGGTGG TCGGCCGCCG CATCATTCCG
TGGATGCTGC ACTACGTCGC GCACACCGGC TCGCGCGAGC TGTTTCGTCT TGCGGTGCTG
GCGATCTCGC TCGGCGTCGC GTTCGGCGCG GCCGTGCTGT TCGACGTATC GCTCGCGCTC
GGCGCGTTCT TCGCCGGCAT GATCTTGTCG GAGTCCGAGC TCAGCCATCG CGCCGCCAAC
GAGACGCTGC CGCTGCGTGA TGCGTTCGCG GTGCTGTTCT TCGTCTCGGT CGGCATGCTG
GTCGATCCCG GCATCGTGGT GCGTGAGCCG TTGCCGCTGC TCGTCACCGT ACTGATCATT
GTGTTCGGCA AGTCGATCGC GGCTTTCTTC ATCGTGCGGC TGTTCGGCCA TCCCAACATG
ACGGCGCTGA CGATCTCCGC TTCGCTGGCG CAGATCGGCG AGTTCTCTTT CATCCTCGCC
GGGCTCGGCG TCAGCCTCGG GCTGATGCCG GAGCGCGGCC GCGATCTGGT GCTGGCCGGT
GCGATCATCT CGATCATGCT CAATCCGATG ATGTTCGTGC TCCTCGATCG GGTCAGCGCC
AAGATCGCGG CGGCAGCCGA AGTCGCCAAG CAGGCGGCGA AGGAGGCTGC GGCCGCTGCA
ATGCCGGCGC AGCCGCGCGG CCATATCGTC CTGGTCGGCC ACGGCCGCGT CGGCTCCAAT
GTCAGCACCG CGCTGCGCCG CGCCGGCGCC GACATGGTGG TGATCGAAAA CGACGACGAA
CGGGCGGCAC GGCTGCAGCG TGAAGGCTTC ACCGCGATCA ACGGCAACGC TGCCGCCCAG
GAGATCCTCG ACGAGGCCGA GGTCGCGCAG GCGCACGGCC TGCTGGTGGC GATCCCCAAC
GCGTTCGAAG GCGGCCAGAT CGTCGCCAAG GCGCGTGCGG TCAATCCCGG CCTTTTGATT
ATCGCCCGTG CGCATTCGGC CGAAGAAGTG ACGCATCTGC GCAGCAACGG CGCCAATCTG
GTGATCATGG GCGAAGACGA AATCGCCCGC GCCATGATCG CGCGCCTCGG CGTCGATGCC
GTGAGCGGGG ATGCTGCCGC CAGCCCGATC ACTAGCGCCA CGGCCCCAGC TTCGGCCGGT
GCGGCCGCCT GA
|
|---|
| Protein sequence | MPHNGTMEHN TPLISTIVAG LVLAFAFGVA AQRLKISPLV GYLLAGVVIG PFTPGYVADQ
SLANELAEIG VILLMFGVGL HFSLKDLLEV RAIAIPGAVV QIGAATLLGA GLGHALGWPF
GAGLVFALAL SVASTVVLLR ALQERRLVDS ERGRIAVGWL IVEDIAMVLT LVLLPAVAGL
LKGEATTANL ETVLWPVALT LGKVFAFMVF MLVVGRRIIP WMLHYVAHTG SRELFRLAVL
AISLGVAFGA AVLFDVSLAL GAFFAGMILS ESELSHRAAN ETLPLRDAFA VLFFVSVGML
VDPGIVVREP LPLLVTVLII VFGKSIAAFF IVRLFGHPNM TALTISASLA QIGEFSFILA
GLGVSLGLMP ERGRDLVLAG AIISIMLNPM MFVLLDRVSA KIAAAAEVAK QAAKEAAAAA
MPAQPRGHIV LVGHGRVGSN VSTALRRAGA DMVVIENDDE RAARLQREGF TAINGNAAAQ
EILDEAEVAQ AHGLLVAIPN AFEGGQIVAK ARAVNPGLLI IARAHSAEEV THLRSNGANL
VIMGEDEIAR AMIARLGVDA VSGDAAASPI TSATAPASAG AAA
|
|---|
| |