Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4365 |
Symbol | |
ID | 6412049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4688240 |
End bp | 4690549 |
Gene Length | 2310 bp |
Protein Length | 769 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642714247 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001993336 |
Protein GI | 192292731 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.145999 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACAC AGCCGCGTTC TGCCGAACTA ATTGCTTCAC GACAGCAAGC GCTGCGGCGC AGCCGCAAAT ACGCCGCGTC GCTGCCGATG AGTGCATTGC TGCTGATCGG TGCGGTGGCC GACGATGCGC GGGCTCAGGC TGCGGGAACT GCGCCCACCT CACCGGCCGT GAGCGCGCTG CCTGCCGTGG TCGTCAGTGC CCCGAAGCAG AGCAAGCCGA AACGGAGGGC TACACCGCCG ACCGTAACCG CCGCCCCCGC AGCGCTCCCG CGCCCGACCT CGCGGACGAC AACCGCACGC GACGCCGACG GGCCGGGTTT CGTCGCCCGG ACCAGCACGA CAGGAACCAA GACCAATACG CCGCTGATCG AAACGCCGCA GTCGATCTCG GTGATCAACC GCCAGCAGAT GGACGCGCAG AACGTGCAGT CGGTGACCGA CGCCTTGCGC TACTCGGCCG GCGTTGTCAC GACGACACCG GCGATCTCGC AGCGCTTCGA CACGTTCAGC ATTCGCGGCT TCGATGCGAG CAGCAGCGGA ATCCTGCGCG ACGGCCTGCG CGGCACCACC GCCCAAGCCT GGCCGAAGAG CGAGCCTTAT GGTCTCGAAC GCGTCGAGGT GTTGCGCGGG CCAAGCTCGG TGCTGTACGG CCAGAACGCA CCGGGCGGCC TGGTCAACCT CATCACCAAG CGACCGCTCG ACAAGCCTTT CCACGAAGTG ATGCTGCAGG GCGGCAGCTT CGACCGGCTG CAAGGGCAGT TCGATCTCAG CGGTCCGGTC GACAAGGACG GCCAGTTTCT CTACCGGCTG ACCGGACTGG CGCGCGACAG CAATACGCAA TTCAAGGCGA TCCCGGACGA CAAGGTGTTC ATCGCGCCGG CGTTCACCTG GCGGCCGGAT ATCGACACCA CGCTGACCAT CCTGACCGAC TACAGCCACG AGAAGTTCGG GCCGCCGCGC CCGTACATTC CGATCCAGGG CACGCTGCTT CCGAACAAGA ACGGGCAATT GCCGCGCAAC CAGTTCCTCG ACCAGCCCGG GCTCGACAAC GATCGCACGC AATATTCGGC CGGCTATCTG TTCGAGCGCC ATCTCGACGA CACCTTCACG ATGCGGTCGA ATTTCCGCTA CGGCCACGTC GACCTTTTGA CCAACACCGC GTCAGGCATG AGTCTTGCGG CCGACCAGCG GACACTCAAT CGCGCGCTGT ATCAATTCCG CATCGTCGGC GACACCTACG CGTCCGACAA TCAGATCCAG GCCGACTGGT GGATGGGCTC GACGCAGTTC GTGTCGCTGG CCGGCGTCGA CTATCGCCGT TCGACCGAGG ACTACTACCT CAACAGCGGC CGCGCTCCAT CGATCGACAT CTTCAATCCA GTCTACAACC AGCCGATCGG TGCAGCGACC ACGGCGAGCG CCTCGACCTG GCAGACCTCC GACCAGATCG GCATCTATGG CCAGCAGCAG ATCAAGTTCG ACGGACGTTG GGTACTGAGC CTCGGCGGCC GCCAGGACTG GTCGAACACC GCCACGGATA ACCGCCTGAA ACGCTCGACC GCGACGCAGG ACGACAAGGC GTTCACCTAC CGGGCTGGGC TCGTCTATCT CAGCGACGTC GGCCTCGCGC CCTATATCGG CTACTCGACC TCGTTCAGCC CGGTGCTCGG GACCGACTTC TACGGCCAGC CCTACAAGCC GACCACCGGA CGGCAAGCGG AGATCGGCAT CAAGTACCAG CCGGCCGGGG CAACCAGCTT CGTCACCATG TCGGTGTTCG ATCTCTATCA GGAGAACGTG CAGACCACCG ATCCGAACAA TTCGCTCAAC CGTCTTCAAG TCGGCGAGGT GCGTTCCCGC GGGTTTGAGC TTCAGGGCGT CGCCAATCCG ATCGCAGGCC TGAATCTCGT GGCCTCATAC ACCCACGCAG AACTGACCGT GACCAAGAGC AACATCGCAG CCGAGCTCGG CAACCGTCCG ACCGGGCTGC CTGCGGACAC CGCGTCGCTG TGGGGCGACT ACACGTTCCA GAGCGGCCCG CTGGCCGGCT TCGGCGCCGG CGTCGGCACG CGCTATGTGG GCGAGAGCTT CGCGGATTCC GCCAACACCA TCGGCGTGCC GTCCTATGTG CTGTTCGACG CCGCACTGCA CTACGATCTC GGCCAGCTTC ATCGCGATCT CAAGGGGATG CGGCTCGCCA TCAACGCCAC CAACCTCACC AACAAGCAGT ACTACGTGAG CTGCTCGGCC ACGAGTTGCA ACGCCGGCTT CGACCGCTCG GTCATCGCCA GCCTTCGCTA CCGGTGGTGA
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Protein sequence | MTTQPRSAEL IASRQQALRR SRKYAASLPM SALLLIGAVA DDARAQAAGT APTSPAVSAL PAVVVSAPKQ SKPKRRATPP TVTAAPAALP RPTSRTTTAR DADGPGFVAR TSTTGTKTNT PLIETPQSIS VINRQQMDAQ NVQSVTDALR YSAGVVTTTP AISQRFDTFS IRGFDASSSG ILRDGLRGTT AQAWPKSEPY GLERVEVLRG PSSVLYGQNA PGGLVNLITK RPLDKPFHEV MLQGGSFDRL QGQFDLSGPV DKDGQFLYRL TGLARDSNTQ FKAIPDDKVF IAPAFTWRPD IDTTLTILTD YSHEKFGPPR PYIPIQGTLL PNKNGQLPRN QFLDQPGLDN DRTQYSAGYL FERHLDDTFT MRSNFRYGHV DLLTNTASGM SLAADQRTLN RALYQFRIVG DTYASDNQIQ ADWWMGSTQF VSLAGVDYRR STEDYYLNSG RAPSIDIFNP VYNQPIGAAT TASASTWQTS DQIGIYGQQQ IKFDGRWVLS LGGRQDWSNT ATDNRLKRST ATQDDKAFTY RAGLVYLSDV GLAPYIGYST SFSPVLGTDF YGQPYKPTTG RQAEIGIKYQ PAGATSFVTM SVFDLYQENV QTTDPNNSLN RLQVGEVRSR GFELQGVANP IAGLNLVASY THAELTVTKS NIAAELGNRP TGLPADTASL WGDYTFQSGP LAGFGAGVGT RYVGESFADS ANTIGVPSYV LFDAALHYDL GQLHRDLKGM RLAINATNLT NKQYYVSCSA TSCNAGFDRS VIASLRYRW
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