| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4340 |
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| Symbol | |
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| ID | 6412024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4667004 |
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| End bp | 4667702 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714222 |
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| Product | Ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001993311 |
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| Protein GI | 192292706 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.404092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCTCCT TCGCGCTCCG TCCGCTCGCC ATCGCGCCCT CGATCCTCGC CTCGGATTTT
TCCAAGCTCG GCGAAGAGGT CCGCGCGGTC GATACCGCCG GCTGCGATTG GATCCATCTC
GACGTGATGG ACGGCCATTT CGTGCCGAAC ATTTCCTACG GCCCGGACGT GATCAAGGCG
ATGCGGCCGC ACACCAAGAA GGTGTTCGAC GCCCATCTGA TGATCGCGCC GTGCGATCCG
TATCTGGAGG CCTTCGCCAA GGCCGGCTGC GACATCATCA CCGTGCACGC CGAAGCCGGC
CCGCATCTGC ACCGCTCGCT GCAGGCAATC CGCGCGCTCG GCAAGAAGGC CGGCGTCTCG
CTCAATCCCG GCACGCACCC GAGCGCGATC GAATACGTGC TCGACGACAT CGACCTGGTG
CTGGTGATGT CGGTGAACCC CGGCTTCGGC GGCCAGGCGT TCATCCCGAG CGCGGTTCAG
AAGATCAAGC AGATCCGCGC CATGGTGGCC GGCCGCCCGA TCGACATCGA GGTCGACGGC
GGCGTGAGTG ACAAGGTCGC CGGCGAACTC GCCGCCGCCG GCGCCAACGC CTTCGTGGCC
GGCTCCGCCG TGTTCAAGGG CGGCACGCTG GAAGCTTACA AGACCAACAT CGCCGGCATC
CGCAATGCCG CGATGCAGGC GCGGGGGGAA GTGGCTTAA
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| Protein sequence | MSSFALRPLA IAPSILASDF SKLGEEVRAV DTAGCDWIHL DVMDGHFVPN ISYGPDVIKA
MRPHTKKVFD AHLMIAPCDP YLEAFAKAGC DIITVHAEAG PHLHRSLQAI RALGKKAGVS
LNPGTHPSAI EYVLDDIDLV LVMSVNPGFG GQAFIPSAVQ KIKQIRAMVA GRPIDIEVDG
GVSDKVAGEL AAAGANAFVA GSAVFKGGTL EAYKTNIAGI RNAAMQARGE VA
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