| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4312 |
|---|
| Symbol | |
|---|
| ID | 6411996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4642144 |
|---|
| End bp | 4642947 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714194 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001993283 |
|---|
| Protein GI | 192292678 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGAC CCTCGCTCAT TCTGCGCGGC TGCGCAGCGG CGCTGCTCGC GCTGACACTC
GCAAGCTGTG GCAAGGGCAA CGATCCCGGT TATCAGGGCT GGGTCGAGGC CGATCTGATC
TTCGTCAGCC CGGACGAATC CGGCCGCATC ACCAAGCTCA AGGTGCGCGA AGGCGACGAG
GCGAAGACCG GCGAGCTGAT CTACACGCTC GACGACGATC TGCAGCAGGC CGATCTCAAT
CAGAATCTTG CGACGCTCGC CAACGCCAAA CAGACCTTCG ACCGCGCTCA ATCGCTGTCG
AAGACCGGTT CCGGCACTCA GGCCAATCTC GATGCTGCGA TCTCGACCCT GCGCGTCGCG
GAAGCGCGCG TGGAGACCTC GAAGACGCGG CTGGCACGCC GCGAAATCCG TGCGCCGGTG
ACCGGCACGG TGCAGCAGAT CTACTTCCGC GAAGGCGAGA TGGTGGCGGC ACAGAAGCCG
GTGCTGTCGA TCCTGCCGCC GGGCAACATG AAGATCCGGT TCTATGTGCC GGAGCCGGAG
CTGCCGAAGC TGGCGATCGG CGAGAAGGTG CGGGTGACAT GCGATAACTG CGCGGCGGAT
CTGTCGGCCG AGATCTATTT CATTTCGACC ACGGCGGAGT ACACGCCGCC GGTCATCTAC
AGCCTCGATG AGCGCAACAA GCTCGTCTAT CTGATCCAGG CGCGGCCCAA CAAACCCGTG
AGCCTGCGGG TTGGCCAGCC GGTCAGCGTG TATTTGCCGC CGGCGGCCGC GACGCCTTCG
CCGGTCGCTG CCAGCAAGCC ATGA
|
|---|
| Protein sequence | MTRPSLILRG CAAALLALTL ASCGKGNDPG YQGWVEADLI FVSPDESGRI TKLKVREGDE
AKTGELIYTL DDDLQQADLN QNLATLANAK QTFDRAQSLS KTGSGTQANL DAAISTLRVA
EARVETSKTR LARREIRAPV TGTVQQIYFR EGEMVAAQKP VLSILPPGNM KIRFYVPEPE
LPKLAIGEKV RVTCDNCAAD LSAEIYFIST TAEYTPPVIY SLDERNKLVY LIQARPNKPV
SLRVGQPVSV YLPPAAATPS PVAASKP
|
|---|
| |