Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4297 |
Symbol | |
ID | 6411981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4625362 |
End bp | 4626555 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642714179 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001993268 |
Protein GI | 192292663 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.430357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCTTG CGACAGAAAC TCCGCCGTCG GCGCGGAGCT CCAGCGAGAA GCCCCGCCCG CGCCCGGTGC GGACGGTGCG CTGGTTCATC ATCGTCGGAT TGCTGCTGGC GCTGCTGGTC GGCGGCCTGG TCGGCTTCAA CGCTTTCCGC AACCATATGA TTGCGCAGTT CTTCGCCAAC AACAAACCGC CGCCGATCAC GGTGACGGTC GCCGAGGCGA AGACCGAAGT GCTGCCCAAT CTGTTGACCG CGGTCGGCGA TCTGGCTGCC GTGCATCAGG TCAACGTCAC CTCCGACGTC TCCGGCCGCA TCACCGACAT CCTGTTTCAG GCTGGTTCGG AGGTGAAGCA GGGCACGCTG TTGGTCAAGC TGTTCGACGA AACCGAGCAG GCCGATCTGG CGAACTACCG GGCGCAGGCC AAGGTTGCCG AGCTGTCGCT CGATCGCGCC AAGCAGCTCG CCGCGCGGCA GTTCGGTCCG CAGGCGACGG TGGACTCGGC GCAGGCCGCC TACGATCAGG CCAATGCCGG CATCGCCAAG ACCGAAGCGT TGATATCGCA GAAGAAGGTG CGGGCACCGT TCGACGGCGT GCTCGGCGTG CGCCACGTCG AAGTCGGCCA GTATCTCAGC GCCGGCACCC AGATCGTGAC GCTCACCGAC CTGTCGCAGG TCTATGCCAA CATCACCGTG ACGGAAAAAG ACTCCGGCAC GCTGGCTGTC GGTCAGGCCG TGCGGCTGAA GGTCGATGCC TATCCGGGCC GCGTGTTCGA CGGCAAGATC ACCACGATCG AGCCGCAGAT CTCGTCCGAC ACCCGCAACA TCCGGGTGCA GGCGACACTC GACAATCCGG GGCACGTGCT GCGGCCGGGC ATGTTCGCCA CCACCATCGT GGTGCTGCCG GACAAGCCGG CGGTCGTCAC CGTGCCGGAG ACTGCGGTCG ACTACACGCT GTACGGAGAC TCGGTCTTCC TGATCAAGGA AGAGAAGGGC GAGGACGGCA AGGCCAAGCT TTCGGCGGTG CGGACCTTCG TGCGCACCGG TGACCGCATC GATGGCCGCA CCGTGATCCA GACCGGTTTG AAAGCAGGTG ATCGCGTCGT CGCGGTCGGC CAGCTCAAGC TGCAGTCGGG TGCCGCGGTT GCGATCTCGA CCGATCCGCC TCCGCCGCAG CCGAAGACGC CGCCGCGTTA CTAA
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Protein sequence | MTLATETPPS ARSSSEKPRP RPVRTVRWFI IVGLLLALLV GGLVGFNAFR NHMIAQFFAN NKPPPITVTV AEAKTEVLPN LLTAVGDLAA VHQVNVTSDV SGRITDILFQ AGSEVKQGTL LVKLFDETEQ ADLANYRAQA KVAELSLDRA KQLAARQFGP QATVDSAQAA YDQANAGIAK TEALISQKKV RAPFDGVLGV RHVEVGQYLS AGTQIVTLTD LSQVYANITV TEKDSGTLAV GQAVRLKVDA YPGRVFDGKI TTIEPQISSD TRNIRVQATL DNPGHVLRPG MFATTIVVLP DKPAVVTVPE TAVDYTLYGD SVFLIKEEKG EDGKAKLSAV RTFVRTGDRI DGRTVIQTGL KAGDRVVAVG QLKLQSGAAV AISTDPPPPQ PKTPPRY
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