Gene Rpal_4290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4290 
Symbol 
ID6411974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp4617430 
End bp4618110 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content65% 
IMG OID642714172 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001993261 
Protein GI192292656 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.000567463 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCGCA CGCGAGCCAC CGACTACGAC GATAAACGCC GCGGCATTCT CAGCCGTTCC 
GCACGGCTAT TCGCCGAACA CGGCTACACC GGCACTTCGA TCACCATGAT CGCCGACGCC 
TGCGGCGTCT CGAAGGCGCT GATGTATCAC TACTACCCGT CGAAGGATGC GGTGCTGTTC 
GATCTGCTCG AGGATCACCT GCAGCATCTG GTGACGGTGG TCGACGCCGC CGCGCAGGGC 
GAAAGCGATC CGAGCGACCG GCTGTTCGCG ATTTCGGCGG CGCTGCTCGA AGCCTATCGC 
GGCGCCGATG CCGAACATCA GGTGCAGATT TCCAGCCTGA AGCTGCTGCC GCCGGAGCAG 
CAGGAGACGC TCAAGGCGCT GGAGCGCAAA TTGGTGGTGT CGATGTCGGA CGCGATCGCC 
GCCGCGATTC CGGCCGCAGC CGCCAAGCCG GAACTGCTGA AGCCGCTGAC GATGTCGCTG 
TTCGGCATGC TGAACTGGCA CTATTTGTGG TTCCGCGAAG GCAAAGGCCT GTCGCGCGAA 
ACCTACGCGC AGATGGTGAC GACGCTGATG ATCGCCGGCG CCGAACAGGC GATCGACGCG 
ATCACCGAAC CGCCAGCCAA AGCCGAGCGC GCAGCGACGC GGAAGAAGAG CGAGCGGGCG 
GCGGTGGCGC GGCGGGCGTA A
 
Protein sequence
MARTRATDYD DKRRGILSRS ARLFAEHGYT GTSITMIADA CGVSKALMYH YYPSKDAVLF 
DLLEDHLQHL VTVVDAAAQG ESDPSDRLFA ISAALLEAYR GADAEHQVQI SSLKLLPPEQ 
QETLKALERK LVVSMSDAIA AAIPAAAAKP ELLKPLTMSL FGMLNWHYLW FREGKGLSRE 
TYAQMVTTLM IAGAEQAIDA ITEPPAKAER AATRKKSERA AVARRA