| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4281 |
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| Symbol | |
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| ID | 6411965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4607814 |
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| End bp | 4609355 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714163 |
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| Product | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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| Protein accession | YP_001993252 |
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| Protein GI | 192292647 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR02299] 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0364491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATG CCGCCACGAA CTCTTCCGGA TTTCAGGCCA ATCTCGACCG TGCCGCGCCA
CTGCTGAAGC AGCTCAAGGC CGATGGCATC GGCCATCTGA TCGGCGGCGA GATCGTCGCA
GCCTCATCCG GCGAAGTGTT CGAGACGGCC TCGCCGATCG ACAATTCGGT GCTGGCGCAG
GTGGCGCGCG GCACGGCGGC GGACATCGAC CGCGCTGCCA AGGCCGCTAA GGCTGCGTTT
CCGGCGTGGC GTGACATGGC GCCCGCCAAG CGGCGCAAAC TGCTACACGC AATCGCGGAT
GCGATCGAGG CGCGCGCCGA CGACATCGCG GTGCTGGAAT GCACCGACAC CGGCCAGGCG
CATCGCTTCA TGGCCAAGGC CGCAATCCGC GCTGCCGAGA ACTTCCGGTT CTTCGCCGAC
AAATGCGCCG AGGCGCGCGA CGGGCTGAAC ACGCCGAGCG ACGAGCATTG GAACGTCTCG
ACCCGGGTGC CGATCGGACC GGTCGGCGTG ATCACGCCGT GGAATACGCC GTTCATGCTG
TCGACCTGGA AGATCGCCCC CGCGCTCGCG GCCGGCTGCA CCGTGGTGCA CAAGCCGGCC
GAGTGGTCGC CGGTGACCGC CGACATGCTG GCGCGCATCT GCAAGGACGC CGGGCTGCCA
GACGGCGTGC TCAACACTGT GCACGGTTTC GGCGAAGAGG CCGGCAAGGC GCTGACCGAA
CATCCGGCTA TCAAAGCGAT CGCCTTCGTC GGCGAAACCG CCACCGGCGC CGCCATCATG
GCGCAGGGCG CGCCGACGCT GAAGCGGGTG CATTTCGAGC TCGGCGGCAA GAACCCGGTG
ATCGTGTTTG GCGACGCCGA TCTCGATCGC GCGCTCGATG CCGTGGTGTT CATGATCTAC
TCGCTGAACG GCGAGCGCTG CACCTCGTCG AGCCGGCTCT TGGTACAGTC CTCGATTGCC
GACAGCTTCA TCGAGAAGCT CGCCGCCCGG GTGCGCGCCC TCAAGGTCGG CCACCCGCTC
GATCCGGCCA CCGAAGTCGG TCCGCTGATC CATCAGCGCC ATCTCGACAA GGTGTGTTCC
TATGTCGACG TCGCCCGAAA AGACGGCGCC ACCATCGCGG TCGGCGGCGC GCCCTTCGAC
GGCCCAGGCG GCGGCCACTA TGTGCAGCCG ACGCTGGTGA CCAATGCGCG CAGCGACATG
CAGGTGGCGC AGGATGAGGT GTTCGGACCT TTCCTCACCG TGATCCCGTT CAAGGACGAA
GCGGACGCTG TCCGTATCGC CAATGACGTC CGCTATGGCC TCACCGGCTA TGTCTGGACC
GCCGACATGG GCCGCGCCCT GCGCGTCGCC GATGCGCTCG AAGCCGGCAT GATCTGGCTG
AACTCGGAGA ACGTCCGCCA TCTGCCGACT CCGTTCGGCG GCATGAAGCA GTCCGGCATC
GGCCGCGACG GCGGCGACTA CTCGTTCGAG TTCTACATGG AGACCAAGCA CGTCTCGCTG
GCCCGCGGCA CGCACAAGAT TCAGAAGCTG GGGGCGGTGT AG
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| Protein sequence | MADAATNSSG FQANLDRAAP LLKQLKADGI GHLIGGEIVA ASSGEVFETA SPIDNSVLAQ
VARGTAADID RAAKAAKAAF PAWRDMAPAK RRKLLHAIAD AIEARADDIA VLECTDTGQA
HRFMAKAAIR AAENFRFFAD KCAEARDGLN TPSDEHWNVS TRVPIGPVGV ITPWNTPFML
STWKIAPALA AGCTVVHKPA EWSPVTADML ARICKDAGLP DGVLNTVHGF GEEAGKALTE
HPAIKAIAFV GETATGAAIM AQGAPTLKRV HFELGGKNPV IVFGDADLDR ALDAVVFMIY
SLNGERCTSS SRLLVQSSIA DSFIEKLAAR VRALKVGHPL DPATEVGPLI HQRHLDKVCS
YVDVARKDGA TIAVGGAPFD GPGGGHYVQP TLVTNARSDM QVAQDEVFGP FLTVIPFKDE
ADAVRIANDV RYGLTGYVWT ADMGRALRVA DALEAGMIWL NSENVRHLPT PFGGMKQSGI
GRDGGDYSFE FYMETKHVSL ARGTHKIQKL GAV
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