| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4277 |
|---|
| Symbol | |
|---|
| ID | 6411961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4604685 |
|---|
| End bp | 4605770 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642714159 |
|---|
| Product | Malate/L-lactate dehydrogenase |
|---|
| Protein accession | YP_001993248 |
|---|
| Protein GI | 192292643 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2055] Malate/L-lactate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.073979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACGG TGCAGGTCGA TCGTTTGATC GATTTCGTCG CCCAGGTGTT TGAGCGTGCG
GGCTCGTCCA AGGAAGAGGC GCGGCGGATC GGCTCGTATC TCACCACCGC CAATCTCACA
GGCCACGACA GCCACGGCGT TATCCGCGTG CCGGTCTACA TCCGCTGGCG CAACGCCGGC
GCGGTGCATC CGGACCAGAC CGTCGATGTC CCGGTCGATC TGCCGTCGCT CGCAGTGGTC
GACGGCAAGT TCGGCTATGG CCAGACTGTG GGCCCGCAGG CGGTGCGGAT CGGCATCGAC
AAGTGCAAGG CGCAGGGGCT GTCGGCGGTG GCGCTGAAGA ACGCCGGTCA CATCGGCCGG
ATCGGAGACT GGGCCGAGAT GGCCGCCGCT GAAGGCTTGG TGTCGATTCA CTTCGTCACC
GCGGCGGGCT CGATCCTGGT GGCGCCGTTC GGCGGCGTCG AACGCAGATT GTCCACTGCG
CCGTATTGCG TCGGCATCCC GCGCCCTGAC GCGCCGCCGG TGGTGCTCGA TCTTGCCACC
TCGATCGTCG CCGAAGGCAA GGTGCTGGTC GCGGCGCGCG GCGGCAAGAA GCTGCCGCAA
GGCGCGCTGA TCAATGCCGA CGGCTCTTTG AGCGAAGATC CGGCGACGCT GTACGGCCCG
CACGAGAAGG ACGGCCCGAT CAACCACGCC AACGGCCGAG GGGCGATCCG CGCCTTCGGC
GAACACAAGG GCTCGGGGCT GGCGCTGATC TGCGAACTGC TCGGCGGCGC GCTCACCGGC
AACGGCGCCA CCGGCCCGGA CCGGCCATTC GCCAACGGCA TGTTCTCGAT CTATGTCGAT
CCGAAGCGCA TCGATCCGGC GCACGTCTTC GATGCCGAAG TCACCCGCTA CATCGACTTC
TTCAAAAGCT CCAAGACGGT CGCCGGCGTC GATCAGGTGT TGATCCCCGG CGATCCTGAA
ACCGCCACTT GCGCCGAGCG GACCAGGAAC GGCGTTCCGC TCCCCGACGA CACCTGGGCC
GCCATCGTCG CCACCGCGCG CGAAGTCGGC GTCGACGAAG CCGCGATCCA GGCGGCGACG
GCGTGA
|
|---|
| Protein sequence | MVTVQVDRLI DFVAQVFERA GSSKEEARRI GSYLTTANLT GHDSHGVIRV PVYIRWRNAG
AVHPDQTVDV PVDLPSLAVV DGKFGYGQTV GPQAVRIGID KCKAQGLSAV ALKNAGHIGR
IGDWAEMAAA EGLVSIHFVT AAGSILVAPF GGVERRLSTA PYCVGIPRPD APPVVLDLAT
SIVAEGKVLV AARGGKKLPQ GALINADGSL SEDPATLYGP HEKDGPINHA NGRGAIRAFG
EHKGSGLALI CELLGGALTG NGATGPDRPF ANGMFSIYVD PKRIDPAHVF DAEVTRYIDF
FKSSKTVAGV DQVLIPGDPE TATCAERTRN GVPLPDDTWA AIVATAREVG VDEAAIQAAT
A
|
|---|
| |