| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4275 |
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| Symbol | |
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| ID | 6411959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4600078 |
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| End bp | 4603419 |
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| Gene Length | 3342 bp |
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| Protein Length | 1113 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714157 |
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| Product | transglutaminase domain protein |
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| Protein accession | YP_001993246 |
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| Protein GI | 192292641 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0684346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGATCT ATGTCGCCCT TCATCACGTC ACGCATTACA AATACGACCG TCTGGTCGAC
ATCGGTCCTC AGACCATCCG GCTGCGTCCG GCGCCGCATA CGCGGACGCC GATTCTGTCG
TATTCGCTGA AGGTCACGCC GGCGAACCAC TTCATCAATT GGCAGCAGGA CCCGCAGGGC
AACTGGCTGG CGCGGTTCGT GTTTCCTGAG AAGGCGGACG AACTCAAGAT CGAGGTCGAT
TTCACCGCGG CGATGACGGT GATCAACCCG TTTGACTTCT TCGTCGAGAG CTACGCCGAG
AGCTTCCCGT TCTCATATAC CGGCGACCTG CAGCACGAGC TGGCGCCATA TCTGGCGACG
ACCGAGCCGG GGCCGCTGTT CAAAGCCTAT CTCGATTCGA TTCCGCGTGA AGCGGAAAGC
ACCGTCAACT TCCTGGTCGA CCTCAACGCC AAACTGCGCG AGCGGGTCAA CTACATCATC
CGGATGGAAC CAGGGGTGCA GACGCCAGAG GAGACGCTGG CCAAAGGCGC CGGCTCGTGC
CGCGACTCGG CGTGGCTGCT GATCCAGACG CTGCGGCATC TCGGTCTCGC GGCGCGGTTC
GTGTCCGGTT ACTTGATCCA GCTTCGCCCC GACATCGAGT CGCTCGACGG CCCGAAGGGC
GCCACGCACG ACTTCACCGA TCTGCACGCC TGGGCCGAAG TGTACCTGCC CGGCGCCGGC
TGGGTCGGCT TCGACGTGAC TTCGGGATTG CTTGCGGGCG AGGGCCACAT CCCGGTCGCC
GCCACGCCGC ATTATCGCAC GGCGGCGCCG ATATCCGGCG TGGTCGGCTT CGCCAATGTC
GATTTCAAAT TCGACATGCG GGTCGCGCGC ATCCGCGAAG CGCCGCGGAT CACCATGCCG
TTCTCCGACG AATCCTGGGC GAGGCTGGAT GCGCTCGGCG AAAAGGTCGA TGCCGATCTG
GTCGCGCACG ACGTGCGGCT GACGATGGGC GGCGAGCCGA CCTTCGTATC GATCGACGAT
CTGGAATCGC CGGAGTGGAA CGTCGCCGCG GTCGGCGGCG CCAAGCGGAT GCTGGCGGAC
GATCTGATCC GGCGCCTGCG CACGCGGTTC GCACCCGGCG GCCTGCTGCA TTTCGGCCAG
GGCAAATGGT ATCCGGGCGA AAGCCTGCCG CGCTGGGCGT TCGGTCTGTA TTGGCGCAAG
GACGGCGTGC CGATCTGGAA CAACGCCGAA CTGATCGCGC CGGTGGTCGG CCAGCGGCCG
GCGAAGGTCG AGGAGGCCGA GCAGTTCGCG ATCGGCACCG CGAAGCGGCT CGGCATCGAC
ACCGACTACG TGCTGCCGGC CTATGAGGAT CCGAACCACT GGCTGCAGAA GGAAGCCGCG
CTGCCGCCGA ATGTCGATCC GCAGGATAAC AAGCTGTCCG ATCCGGAAGA GCGTGCCCGG
ATGGCGCGGG TGTTCGACAC CGGGCTGAAT ACGCCGCGCG GTTTCGTGCT GCCGATCCAG
GCGTGGAATG CGGAAGCGAC GCCGGCGCAG AAGAAGCGCT GGCGCAGCGA GCGCTGGAAG
CTGCGGCGCG GCAATCTGTT CCTGCTGCCG GGCGACTCGC CGCTCGGTTT CCGGCTGCCG
ATTTCGTCGC TGCCGCACAT TCCGGAAGAC GACTATCCGT TCATCGTGCC GCGCGATCCG
CTCGAGCCGC GCGGCACGCT GCCGCTGTTC GCGCCGCCGC CGGCGAACGA TGCCGATCCC
GAGCGCGAGC AGATGCCGGT GTTCGAACAG TCGGCCGGCG AGGCGACGAC AAGTCAGCCG
GTCGAGGAGC AGAAGCTTCG CAAAGGAGGG GTGCGCACCG CGATGTCGAT CGAGCTGCGC
GAGGGCGTGC TCTGCGCCTT CATGCCGCCG ACAGAAACCA TCGAGGACTA TCTCGAGCTG
ATCGCCGCGG TCGAAGCCAC CGCCGAAGAG ATGCAGATCC GGGTCCACAT CGAAGGCTAT
CCGCCGCCTT ACGATCCGCG CATCGACGTC ATCAAGGTGA CGCCCGACCC GGGCGTGATC
GAAGTCAACA TTCAGCCGGC CTCGAGCTGG CGCGAGGCAG TGCGGACCAC CTTCGGCCTG
TATGAGGACG CCGCGCAGGT GCGGCTCGGC GCCAACCGCT TCCTGATCGA TGGCCGCCAC
ACCGGCACCG GCGGCGGCAA CCACGTCGTG GTCGGCGGCG CCAGCCCCGC GGACTCTCCG
TTCTTGAGAA GGCCGGATCT ACTCAAGAGT CTGGTGCTGT TCTGGCAGCG GCATCCGTCA
CTGTCGTATC TGTTCTCCGG GATGTTCATC GGCCCGACCA GCCAGGCGCC GCGGATCGAC
GAGGCGCGGC ACGATTCGCT GTATGAACTC GAAATCGCGC TGACCCAGGT GCCGCCGCCG
GGTGTGAAGG GGCCGCTGTG GCTTGCTGAT CGACTATTCC GCAACATCCT GGTCGACATC
ACCGGCAACA CCCATCGCGC CGAGATCTGC ATCGACAAGA TGTACTCGCC GGATAGTCCG
ACCGGGCGTC TCGGTCTGGT CGAGTTCCGC GCGCTGGAGA TGCCGCCCGA TCCGCGGATG
TCGCTAGCGC AGCAGCTTCT GATCCGCGCG CTGATCGCGA TGCTGTGGCG CGAGCCGCTC
TCCGGCAAGT TCGTCCGCTG GGGCACGGCG CTGCACGACC GCTTCATGCT GCCGCATTAT
TTGTGGGAGG ACTTCCGCGA CGTGCTCGGC GAGCTCGCAC GCGCCGGCTA TGCGTTCGAG
TCGGAGTGGT TCACCGCGCA GCTCGAGTTT CGTTTTCCCG TGTTCGGCAG CGTGTATCAC
GGCGGTGTCA CATTGGAGGT GCGGCAGGCG TTGGAGCCGT GGCACGTGCT GGGCGAAGAG
GGGACCGCGG GCGGCACGGT GCGCTTTGTC GACTCGTCGG TGGAGCGGCT GCAGGTCAAG
GCCGAGGGCT TCGTCGAGGG CCGCCACGTC ATCACCTGCA ACGGCCGCCG GCTGCCGATG
ACGGCGACCG CGCGCTCCGG CGAAGCGGTG GCGGCGGTGC GGTTCAAGGC GTGGCAGCCG
GCCTCCGGGC TGCATCCGAC CATTCCGGTG CACGCGCCGC TGGTGTTCGA CATCGTCGAC
ACCTGGAACG GCCGCTCGCT CGGCGGCTGC GTCTATCACG TCGCCCATCC TGGCGGCCGC
GCCTACGAGA CCAAGCCGGT GAACTCGTAC GAAGCCGAGG CCCGGCGGCT GGCCCGGTTC
CAGGATCACG GCCACACCCC GGGCCGGATC GATTCGCCGC ATGAAGAACG CACACTTGAA
TTCCCGCTGA CCCTCGACTT GCGCACGCCA CTGCTGCATT GA
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| Protein sequence | MSIYVALHHV THYKYDRLVD IGPQTIRLRP APHTRTPILS YSLKVTPANH FINWQQDPQG
NWLARFVFPE KADELKIEVD FTAAMTVINP FDFFVESYAE SFPFSYTGDL QHELAPYLAT
TEPGPLFKAY LDSIPREAES TVNFLVDLNA KLRERVNYII RMEPGVQTPE ETLAKGAGSC
RDSAWLLIQT LRHLGLAARF VSGYLIQLRP DIESLDGPKG ATHDFTDLHA WAEVYLPGAG
WVGFDVTSGL LAGEGHIPVA ATPHYRTAAP ISGVVGFANV DFKFDMRVAR IREAPRITMP
FSDESWARLD ALGEKVDADL VAHDVRLTMG GEPTFVSIDD LESPEWNVAA VGGAKRMLAD
DLIRRLRTRF APGGLLHFGQ GKWYPGESLP RWAFGLYWRK DGVPIWNNAE LIAPVVGQRP
AKVEEAEQFA IGTAKRLGID TDYVLPAYED PNHWLQKEAA LPPNVDPQDN KLSDPEERAR
MARVFDTGLN TPRGFVLPIQ AWNAEATPAQ KKRWRSERWK LRRGNLFLLP GDSPLGFRLP
ISSLPHIPED DYPFIVPRDP LEPRGTLPLF APPPANDADP EREQMPVFEQ SAGEATTSQP
VEEQKLRKGG VRTAMSIELR EGVLCAFMPP TETIEDYLEL IAAVEATAEE MQIRVHIEGY
PPPYDPRIDV IKVTPDPGVI EVNIQPASSW REAVRTTFGL YEDAAQVRLG ANRFLIDGRH
TGTGGGNHVV VGGASPADSP FLRRPDLLKS LVLFWQRHPS LSYLFSGMFI GPTSQAPRID
EARHDSLYEL EIALTQVPPP GVKGPLWLAD RLFRNILVDI TGNTHRAEIC IDKMYSPDSP
TGRLGLVEFR ALEMPPDPRM SLAQQLLIRA LIAMLWREPL SGKFVRWGTA LHDRFMLPHY
LWEDFRDVLG ELARAGYAFE SEWFTAQLEF RFPVFGSVYH GGVTLEVRQA LEPWHVLGEE
GTAGGTVRFV DSSVERLQVK AEGFVEGRHV ITCNGRRLPM TATARSGEAV AAVRFKAWQP
ASGLHPTIPV HAPLVFDIVD TWNGRSLGGC VYHVAHPGGR AYETKPVNSY EAEARRLARF
QDHGHTPGRI DSPHEERTLE FPLTLDLRTP LLH
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