| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4264 |
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| Symbol | |
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| ID | 6411948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4585344 |
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| End bp | 4586222 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714146 |
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| Product | squalene synthase HpnC |
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| Protein accession | YP_001993235 |
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| Protein GI | 192292630 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTCTG CGAGCGAGCT TCGATCGGGC AAGACCCACC GGGACGAGAA TTTCCCGGTC
GCGTCGTGGA TCATCCATCC GCGGCATCGC GACCTGATTC TGGCGTTCTA CAATTTCGTC
CGGACCGCGG ACGACATCGC CGATCACGAG ATGCTCGATG GCGACACCAA GCTCGAATAT
CTCGATCTGC TCGAAGCCGA GCTGCTCGGC CGCGGCGAGA CCCAGCCCGA GGCGGTGCAT
CTGCGTCGGG CGCTGGCCGA ACGCGGCATG CCGCCGCGCC ATGCGCTCGA TCTGCTGACC
GCGTTTCGGA TGGACGTCAC CAAGCTGCGC TACGAGGATT GGGACGAGGT CATTCACTAC
TGCCGCTACT CGGCGATGCC GGTTGGCCGC TTCATGCTCG ACGTCCACGG CGAAAGCACC
ACGACCTGGC AGGCCTCCGA CGCGCTGTGC GCGGGGCTTC AGATCAACAA TCACCTGCAG
GACTGCGGCA AGGACTATCG CACCCTCAAT CGCGTGTATC TGCCACGCGA CGTGCTCGAT
GCCGCCGGCG CCAAGGTCGA AGACCTCGGC CTGCAGAAGT CGTCACCGGC GCTGCTGAAA
TGCCTGCAGG GTCTTGCGGT CCGCACCGCG TCGCTGCTCG GCGACGGCCG GCCGCTCGCC
GCCGAGATCA AGGATTATCG CCTCGGTCTC GAAGTCTCGG TGATCCAGGC CTATGCCGAT
CGCATCGTGC GGATGCTGCA GACCCGCGAT CCGCTCAGCG AGCGCGTGCA TCTGAAGCCG
ATCGAATTCG TGATCGCCAG CTTCGGCGCG ATGAGTTCGG AGATCGTCCG TCGTAGCTTC
GGAAAGGGGC CGGTGTCGCA TCCGGCGCCG CGCGCATGA
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| Protein sequence | MTSASELRSG KTHRDENFPV ASWIIHPRHR DLILAFYNFV RTADDIADHE MLDGDTKLEY
LDLLEAELLG RGETQPEAVH LRRALAERGM PPRHALDLLT AFRMDVTKLR YEDWDEVIHY
CRYSAMPVGR FMLDVHGEST TTWQASDALC AGLQINNHLQ DCGKDYRTLN RVYLPRDVLD
AAGAKVEDLG LQKSSPALLK CLQGLAVRTA SLLGDGRPLA AEIKDYRLGL EVSVIQAYAD
RIVRMLQTRD PLSERVHLKP IEFVIASFGA MSSEIVRRSF GKGPVSHPAP RA
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