| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4261 |
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| Symbol | |
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| ID | 6411945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4581257 |
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| End bp | 4583218 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714143 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001993232 |
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| Protein GI | 192292627 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.942083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTCCG GCAGCTACAC GACTGGTGTG GAGCGCAACG CGCTCGAAGC TTCGATCGAT
GCGGCGCGCA GCGCGCTGCT GAATTATCGT CGCGACGATG GCCATTGGGT GTTCGAACTC
GAGGCCGATT GCACCATTCC TGCCGAATAC GTGCTGCTGC GGCATTACCT CGGCGAGCCG
GTCGATGCCG AGCTCGAAGC CAAGATCGCG GTTTATCTGC GCCGCATCCA GGGTGCCCAT
GGCGGCTGGC CGCTGGTGCA CGACGGCGAC TTCGACATGA GCGCCAGCGT GAAGGGTTAC
TTCGCGCTGA AGATGATCGG CGACAGCATC GATGCCCCGC ATATGGTGCG GGCGCGCGAG
GCGATCCGTT CGCGCGGCGG CGCGATCCAC TCCAACGTCT TCACCCGGTT TCTGCTCACG
TTGTACGGCG TTACGACCTG GCGCGCGGTT CCGGTACTGC CGGTCGAGAT CATGCTGCTG
CCGAGCTGGT CGCCGTTCAC ACTGACCAAG ATCTCGTATT GGGCGCGTAC CACGATGGTG
CCGCTGCTCG TGCTGTGCGC GCTGAAGCCG CAGGCCAAGA ATCCGAAGGG CGTCGGCATC
GACGAACTAT TCCTTCAGGA CCCGAAGACG ATCGGGATGC CGGTCAAGGC GCCGCATCAG
AACTGGGCGC TGTTCAAGCT GTTCGGATCG ATCGACGCGG TGCTGCGCGT GATCGAGCCT
GTGATGCCCA AAGGCATCCG CAAGCGCGCG ATCGACAAGG CGCTCGCCTT CATCGAGGAG
CGGCTCAACG GCGAGGACGG CATGGGCGCG ATCTTCCCGC CGATGGCCAA CGCCGTGATG
ATGTACGAGG CGCTCGGCTA TCCCGAGGAC TATCCGCCGC GCGCCAGCCA GCGCCGCGGC
ATTGATCTCT TGCTGGTCGA TCGCGGCGAC GAAGCCTACT GCCAGCCCTG CGTGTCGCCG
GTGTGGGACA CCGCGCTCGC CAGCCATGCG GTGCTCGAGG CGGACGGTCA CGAGGGCGCC
AAGTCGGTGC GGCCGGCGCT CGACTGGCTG CTCCCGCGCC AGGTGCTCGA CGTCAAGGGC
GACTGGGCCG TCAAGGCCCC GAACGTCCGC CCCGGCGGCT GGGCGTTCCA GTACAACAAC
GCCCACTATC CGGATCTCGA CGATACCGCG GTGGTGGTGA TGGCGCTCGA CCGCGCCCGC
AAGGACCAGC CGAATCCCGC CTACGATGCC GCGATTGCCC GCGCCCGCGA GTGGATCGAG
GGGATGCAGA GCGACGATGG CGGCTGGGGT GCCTTCGACA TCAACAACAC TGAGTATTAT
TTGAACAACA TCCCGTTCTC GGACCATGGC GCGATGCTCG ATCCGCCGAC CGAGGACGTC
ACCGCGCGCT GCGTCTCGAT GCTGGCTCAG CTCGGTGAGA CCATGGACAG CAGCCCGGCG
CTGGCCCGCG CCGTCGGCTA TCTGCGCGAC ACCCAGCTCG CCGAGGGCTC CTGGTACGGC
CGCTGGGGCA TGAATTACAT CTACGGCACC TGGTCGGTGC TGTGCGCCCT CAACGCCGCC
GGCGTTCCCC ATGCCGATCC GATGATCCGC AAGGCGGTCG CCTGGCTGGA GTCGGTGCAG
AATCGCGACG GCGGCTGGGG CGAGGACGCG GTCAGCTACC GACTGGATTA CCGCGGCTAC
GAAAGTGCAC CTTCGACCGC CTCTCAGACG GCATGGGCTT TGCTTGCTCT GATGGCTGCG
GGTGAGGTCG ATCATCCCGC CGTGGCACGG GGCATCGAGT ACCTGAAAAG CACACAGACC
GAAAAAGGAC TGTGGGACGA GCAGCGTTAC ACGGCGACGG GCTTCCCGCG GGTGTTTTAT
CTGCGGTATC ATGGCTATTC GAAGTTCTTC CCACTCTGGG CGCTCGCCCG GTATCGGAAC
TTGCAGGCCA CGAACAGCAA GGTGGTAGGG GTCGGAATGT GA
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| Protein sequence | MDSGSYTTGV ERNALEASID AARSALLNYR RDDGHWVFEL EADCTIPAEY VLLRHYLGEP
VDAELEAKIA VYLRRIQGAH GGWPLVHDGD FDMSASVKGY FALKMIGDSI DAPHMVRARE
AIRSRGGAIH SNVFTRFLLT LYGVTTWRAV PVLPVEIMLL PSWSPFTLTK ISYWARTTMV
PLLVLCALKP QAKNPKGVGI DELFLQDPKT IGMPVKAPHQ NWALFKLFGS IDAVLRVIEP
VMPKGIRKRA IDKALAFIEE RLNGEDGMGA IFPPMANAVM MYEALGYPED YPPRASQRRG
IDLLLVDRGD EAYCQPCVSP VWDTALASHA VLEADGHEGA KSVRPALDWL LPRQVLDVKG
DWAVKAPNVR PGGWAFQYNN AHYPDLDDTA VVVMALDRAR KDQPNPAYDA AIARAREWIE
GMQSDDGGWG AFDINNTEYY LNNIPFSDHG AMLDPPTEDV TARCVSMLAQ LGETMDSSPA
LARAVGYLRD TQLAEGSWYG RWGMNYIYGT WSVLCALNAA GVPHADPMIR KAVAWLESVQ
NRDGGWGEDA VSYRLDYRGY ESAPSTASQT AWALLALMAA GEVDHPAVAR GIEYLKSTQT
EKGLWDEQRY TATGFPRVFY LRYHGYSKFF PLWALARYRN LQATNSKVVG VGM
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