| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4255 |
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| Symbol | ispH |
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| ID | 6411939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4574876 |
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| End bp | 4575820 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642714137 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001993226 |
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| Protein GI | 192292621 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.224121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTGAAG TCCGCCCCCT CGAAGTGTTC CTTGCCCAAC CCCGTGGTTT CTGCGCTGGC
GTGGTGCGTG CGATCGAGAT CGTCGAGCGC GCGCTGGAGA AGTACGGTCC GCCGGTCTAT
GTGCGGCATG AGATCGTGCA TAACAAATAC GTGGTCGAGA GCCTGAAGGC CAAAGGCGCG
ATCTTCGTCG AGGAGCTGTC GGAAGTTCCG CCGAAGGCCG TGACCGTGTT CAGCGCCCAC
GGCGTCGCCC GCAGCATCGA GGAAGAGGCC GCGGCGCGTG ACCTGCCGGT GCTCAACGCC
ACCTGCCCGC TGGTCACCAA AGTGCATAAC CAGGGCAAGC GCTATACGTC GAAGGGCCGC
ACCCTGATCC TGATCGGCCA TGCCGGCCAT CCGGAAGTCG AAGGTACGAT GGGCCAGGTT
CCCGGTCCTG TGCTGCTGGT GCAGAACCTC GACGACGTCG CGGCGCTGAC GCTGCCGCCG
GAAACCCCGG TGGCGTACAT CACCCAGACC ACGCTGAGCG TCGACGACAC CAAGGACATC
ATCGTGGCGC TTTCAAAGAA ATTCCACGAT ATCGAAGGCC CGGACACCCG CGACATCTGC
TATGCCACGC AAAACCGGCA ATCGGCGGTG CGGCAGATGA GCAAGCTGGT CGACCTGATC
CTGGTGGTCG GAGCCAACAA CAGTTCGAAC TCCAACCGAC TGCGGGAAAT CGGCACCGAA
GCCGGCATCC CGAGCTACCT GATCGCCGAT GGCAGCGAGC TCGACCCGGC CTGGCTCGAC
GGCAAGAAGG CGGTCGGCAT CACCGCCGGC GCCTCGGCCC CGGAAGTGCT GGTCGACGAC
GTGATCGAAG CGCTGCGCCG GATCGTCCCG GTCACCGTTT CGGTGCTGCC GGGCCGCGAA
GAAAACATCG AATTCGTTCT GCCCGCGGAA CTGGCCACCG CCTGA
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| Protein sequence | MSEVRPLEVF LAQPRGFCAG VVRAIEIVER ALEKYGPPVY VRHEIVHNKY VVESLKAKGA
IFVEELSEVP PKAVTVFSAH GVARSIEEEA AARDLPVLNA TCPLVTKVHN QGKRYTSKGR
TLILIGHAGH PEVEGTMGQV PGPVLLVQNL DDVAALTLPP ETPVAYITQT TLSVDDTKDI
IVALSKKFHD IEGPDTRDIC YATQNRQSAV RQMSKLVDLI LVVGANNSSN SNRLREIGTE
AGIPSYLIAD GSELDPAWLD GKKAVGITAG ASAPEVLVDD VIEALRRIVP VTVSVLPGRE
ENIEFVLPAE LATA
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