| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4254 |
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| Symbol | |
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| ID | 6411938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4571957 |
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| End bp | 4574563 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714136 |
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| Product | hopanoid biosynthesis associated RND transporter like protein HpnN |
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| Protein accession | YP_001993225 |
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| Protein GI | 192292620 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0797101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGAAAA GTGCCATCGT CTCCATTGTC AGAGCCAGCA CCCGTTTTGC GGCTTTTACT
GTGCTGATCG GCGTATTTCT CGCAGTTGCA GCAGGTTTCT ATACTTACCA ACATTTCGGG
ATCAACACAG ACATCAATCA TTTGATCTCG TCTGATCTCG ACTGGCGCAA ACGTGATATC
GCGTTCGAGA AGGCATTCGA CCAGGAACGG CTGATCCTGG CCGTCGTCGA GGCCCCGACG
CCGGAATTCG CCAATGCCGC GGCGGCCAAG CTCACGGCCG AATTGTCCAA GAATAACATC
AACTTCGACT CGGTGAAGCG GCTCGGCGGC GGGCCGTTTT TCGACCGCAG CGGGCTGCTG
TTCCTGCCCA AGGACGAGGT CGCCAAGGCC ACCGGCCAGT TCCAGCAGGC GGTTCCCCTG
ATCGAGATCA TGGCCGGCGA TCCGTCGATC CGCGGCCTGA CGGCGGCACT CGAGACCGGT
CTGGTCGGGT TGAAACGCGG GGAACTGACC CTCGACGCCA CCGCGAAACC TTTCAATACA
GTCGCCGCGA CCGTCGAGGA CGTGCTCGGC AAGCAGCAGG CGTTCTTCTC CTGGCGCGGC
CTGGTCAATC CGGAACCGCT GACCGATGGC GACAAGCGCG CCTTCATCGA GGTCAAGCCG
ATCCTCGACT TCAAGGCGCT CGAACCCGGC AAGGCGGCGA CCGACGCGAT CCGTCAGGCG
GCAGTCGATC TCAAGATCGA GCAGGATTTC GGCGCCCGGG TGCGGCTGAC CGGCCCGGTG
CCGATCGCCA ACGAGGAATT CGCTACCGTT AAGGACGGCG CCGTGGTCAA CGGCATCGGG
ACCGTCGTGG TGGTGCTGCT GATCCTCTGG ATGGCGCTGC ATTCCTCCAA GATCATCTTC
GCGGTGGCGG CCAATCTGGT GATCGGCCTG TCGATCACCA CCGCGGTCGG CCTGATGCTG
GTGGATTCGC TCAACCTGCT GTCGATCGCG TTCGCGGTGC TGTTCGTCGG CCTCGGCGTC
GATTTCGGCA TCCAATTCAG CGTCCGCTAT CGATCGGAAC GCCACAAGAC CGGGGACCTC
GAGAAGGCCC TGGTCCAGGC CGCCGAATAC TCCGCGGTGC CGCTGTCACT GGCGGCGATG
TCGACCACGG CCGGCTTCCT GTCGTTCCTG CCGACGTCCT ACAAAGGCAT TTCCGAACTC
GGCGAGATCG CCGGTGCCGG CATGGCGATC GCGTTCTTCA CCAGCATCAC CGTGCTGCCG
GCGCTGCTGA AGCTGCTGAA CCCGGCGGGT GAGAAGGAAC CGCTTGGCTA CGCCTTCCTG
GCGCCGGTCG ATCACTTCCT GGAGAAGCAC CGCATCGCCA TCATCGTCGG CACGATCGGT
GTCGCGCTGG CCGGCCTGCC ACTGCTGTAC TTCATGCATT TCGACTTCAA CCCGATCAAT
CTGCGCAGCC CGAAGGTCGA GTCGATCGCG ACGTTCCTTG ACCTGCGCAA GGATCCGAAT
ACCGGTGCCA ACGCCGTCAA CGTGATGGCG CCGAACGAGC AGGCGGCTCG TGAGATCGAA
GCCAAGCTCG CCAAGCTGCC GCAGGTATCG CGCACCATCT CGCTCGACAC TTTCGTGCCG
CCGGACCAGC CGGAGAAGCT GAAGCTGATC CAGGCCGGCG CCAAGGTGCT GGAGCCCGCG
CTCAATCCCG AGCAGATCGA TCCGCCGCCG TCCGATCAGG ACAATATCGC GTCGCTGAAG
AGCTCGGCCG AAGCGCTGCG CCGCGCCGCC GGCGAGGCCA CTGGACCCGG CGCCGACGCC
TCGCGCCGGC TCGCTACCGC GCTGACCAAG CTTGCGGGCG CCGATCAGGC GATGCGCGAG
AAGGCCCAGG ACGTGTTCGT GCGGCCGCTG CTGCTCGACT TCGAACTGCT GCGCAACATG
CTGAAAGCGC AGCCGGTGAC GCTCGACAAC CTGCCGGCCG ACATCGTGTC GTCGTGGAAG
ACCAAGGACG GTCAGATCCG CGTCGAGGTG CTGCCGAGCG GCGACCCCAA CGACAACGAT
ACGCTGCGCA AGTTCGCCGC CGCCGTGCTG CAGGCCGAGC CGTTGGCGAC CGGCGGTCCG
GTGTCGATCC TGAAGTCGGG CGATACCATC GTGGCCTCGT TCATCCAGGC CGGGCTGTGG
GCGTTATTGT CGATCTCGAT CCTGCTGTGG ATCACGCTGC GCCGGATTTC CGACGTGGCG
CTGACCCTGG TGCCGCTGCT GGTGGCCGGT GCGGTGACGC TGGAGATCTG CGTGCTGATC
GATCTGCCGC TGAACTTCGC CAACATCGTC GCCTTGCCGC TGCTGCTCGG CGTCGGCGTC
GCGTTCAAGA TCTATTACGT GACCGCCTGG CGCTCCGGCC GCACCAACCT GCTGCAGTCG
GCGCTGACCC GGGCGATTTT CTTCAGCGCC CTGACCACCG CCACCGCATT CGGCAGCCTG
TGGCTGTCGA GCCATCCGGG AACGGCCAGC ATGGGCAAGC TGCTGGCGCT GTCGTTGCTC
ACCACGCTCG GTGCCGTGCT GCTGTTCCAG CCGGCCCTGA TGGGCAAGCC GCGCCACATC
GACGAGTCCG GCGACACCGA TCTGTGA
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| Protein sequence | MLKSAIVSIV RASTRFAAFT VLIGVFLAVA AGFYTYQHFG INTDINHLIS SDLDWRKRDI
AFEKAFDQER LILAVVEAPT PEFANAAAAK LTAELSKNNI NFDSVKRLGG GPFFDRSGLL
FLPKDEVAKA TGQFQQAVPL IEIMAGDPSI RGLTAALETG LVGLKRGELT LDATAKPFNT
VAATVEDVLG KQQAFFSWRG LVNPEPLTDG DKRAFIEVKP ILDFKALEPG KAATDAIRQA
AVDLKIEQDF GARVRLTGPV PIANEEFATV KDGAVVNGIG TVVVVLLILW MALHSSKIIF
AVAANLVIGL SITTAVGLML VDSLNLLSIA FAVLFVGLGV DFGIQFSVRY RSERHKTGDL
EKALVQAAEY SAVPLSLAAM STTAGFLSFL PTSYKGISEL GEIAGAGMAI AFFTSITVLP
ALLKLLNPAG EKEPLGYAFL APVDHFLEKH RIAIIVGTIG VALAGLPLLY FMHFDFNPIN
LRSPKVESIA TFLDLRKDPN TGANAVNVMA PNEQAAREIE AKLAKLPQVS RTISLDTFVP
PDQPEKLKLI QAGAKVLEPA LNPEQIDPPP SDQDNIASLK SSAEALRRAA GEATGPGADA
SRRLATALTK LAGADQAMRE KAQDVFVRPL LLDFELLRNM LKAQPVTLDN LPADIVSSWK
TKDGQIRVEV LPSGDPNDND TLRKFAAAVL QAEPLATGGP VSILKSGDTI VASFIQAGLW
ALLSISILLW ITLRRISDVA LTLVPLLVAG AVTLEICVLI DLPLNFANIV ALPLLLGVGV
AFKIYYVTAW RSGRTNLLQS ALTRAIFFSA LTTATAFGSL WLSSHPGTAS MGKLLALSLL
TTLGAVLLFQ PALMGKPRHI DESGDTDL
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