Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4244 |
Symbol | |
ID | 6411928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4557789 |
End bp | 4559024 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642714126 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001993215 |
Protein GI | 192292610 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTCCT TGAGCTTTTG CCGTGCGCGC CGGCAGGCGC TGCTGGCACT GTCAGCCGCC GTCCTCGCCC TCGCCTCGCC GGCCCGCGCC GAGAGCCCTG CTGCCGGCCC CAGCGGCGGC ACCATCCGCA TTGGCAATCT GATGCCGTAT TCCGGACCGG CGTCGGCCTA TTCGATCGTC GGGCGGATCG AGCAGGCCTA TTTCAAGATG ATCAACGATC AGGGCGGCAT CAATGGCCGG CAGATCGAGT TCATCTCGTA TGACGACGGC TACAATCCCG CCAAGGCGGT CGAGCAGGTG CGCAAGCTGG TCGAGCGCGA CGAGGTGCTG CTGGTGTTCA GCGCGATGGG CACGCCGTCC AACGCCGCAA TCCAGAAGTA TTTGAACCTG AAGCAGGTGC CGCAATTGTT CGCGGCCACC GGGGCAACCC GGTTCGGCGA TCCCAAGGCG TTTCCGTGGA CGATGGGCTG GCAGCCGCCG TACCAGACCG AAGGCCGAGT CTATGCCAAG TACATCCTGG CGACCAAACC GGCCGCACGG ATCGCGGTGC TGTACCAGAA CGACGACCTC GGCCGCGACC TGCTCAAGGG CCTCAAAGAC GGGCTCGGCG ATCGGGCCGC CGCGATGATT GCCCTGGAGG AGAGCTACGA GGTCACCGAG CCCTCGGTCG ACAACCACGT GGCGCGGATG AAGGCCTCAG GCGCCGACGT TTTCGTGTCC ATTACGACGC CCAAATTCGC CGCCCAGAGC ATCCGCGCCG CCGCCACGCT GGACTGGCAT CCGCTGTATG TGCAGGCGCT GGTATCGGCC TCGATCGCCG CGGTGCTGCG GCCCGCCGGG CTCGACGCCG CGCAGGGACT GGTGTCGGCG GCCTACAACA AGGACGCCGC CGATCCACAG TGGCGCGACG ATCCGGGCAT GAAGCGGTTC CACGCGTTTC TCGACGCCTA CGCGCCGGAC GTCGATCGCG GCGACAATTC GGTGGTGTAC GGCTACGGCG CCGCGCAGAG TCTGGTCGAA GTCCTGCGCC GCGCTGGTGG CGATCTCAGC CGCGCCAACA TCATGAAGCA GGCCGCCAGC CTCCAGGACT ACGTGCCCGA CACGCTGCTC CCGGGCATCA CGGTGAACAC CGCGGCGGAC GACTTCCATC CGATCGAGCA GCTTCGGATG ATGCGGTTCT CCGGCGATCA TTGGGAATTG TTCGGTCCGG TGATCGGCGG CGAGCTGCGC AACTAA
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Protein sequence | MSSLSFCRAR RQALLALSAA VLALASPARA ESPAAGPSGG TIRIGNLMPY SGPASAYSIV GRIEQAYFKM INDQGGINGR QIEFISYDDG YNPAKAVEQV RKLVERDEVL LVFSAMGTPS NAAIQKYLNL KQVPQLFAAT GATRFGDPKA FPWTMGWQPP YQTEGRVYAK YILATKPAAR IAVLYQNDDL GRDLLKGLKD GLGDRAAAMI ALEESYEVTE PSVDNHVARM KASGADVFVS ITTPKFAAQS IRAAATLDWH PLYVQALVSA SIAAVLRPAG LDAAQGLVSA AYNKDAADPQ WRDDPGMKRF HAFLDAYAPD VDRGDNSVVY GYGAAQSLVE VLRRAGGDLS RANIMKQAAS LQDYVPDTLL PGITVNTAAD DFHPIEQLRM MRFSGDHWEL FGPVIGGELR N
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