Gene Rpal_4244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4244 
Symbol 
ID6411928 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4557789 
End bp4559024 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content66% 
IMG OID642714126 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_001993215 
Protein GI192292610 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTCCT TGAGCTTTTG CCGTGCGCGC CGGCAGGCGC TGCTGGCACT GTCAGCCGCC 
GTCCTCGCCC TCGCCTCGCC GGCCCGCGCC GAGAGCCCTG CTGCCGGCCC CAGCGGCGGC
ACCATCCGCA TTGGCAATCT GATGCCGTAT TCCGGACCGG CGTCGGCCTA TTCGATCGTC
GGGCGGATCG AGCAGGCCTA TTTCAAGATG ATCAACGATC AGGGCGGCAT CAATGGCCGG
CAGATCGAGT TCATCTCGTA TGACGACGGC TACAATCCCG CCAAGGCGGT CGAGCAGGTG
CGCAAGCTGG TCGAGCGCGA CGAGGTGCTG CTGGTGTTCA GCGCGATGGG CACGCCGTCC
AACGCCGCAA TCCAGAAGTA TTTGAACCTG AAGCAGGTGC CGCAATTGTT CGCGGCCACC
GGGGCAACCC GGTTCGGCGA TCCCAAGGCG TTTCCGTGGA CGATGGGCTG GCAGCCGCCG
TACCAGACCG AAGGCCGAGT CTATGCCAAG TACATCCTGG CGACCAAACC GGCCGCACGG
ATCGCGGTGC TGTACCAGAA CGACGACCTC GGCCGCGACC TGCTCAAGGG CCTCAAAGAC
GGGCTCGGCG ATCGGGCCGC CGCGATGATT GCCCTGGAGG AGAGCTACGA GGTCACCGAG
CCCTCGGTCG ACAACCACGT GGCGCGGATG AAGGCCTCAG GCGCCGACGT TTTCGTGTCC
ATTACGACGC CCAAATTCGC CGCCCAGAGC ATCCGCGCCG CCGCCACGCT GGACTGGCAT
CCGCTGTATG TGCAGGCGCT GGTATCGGCC TCGATCGCCG CGGTGCTGCG GCCCGCCGGG
CTCGACGCCG CGCAGGGACT GGTGTCGGCG GCCTACAACA AGGACGCCGC CGATCCACAG
TGGCGCGACG ATCCGGGCAT GAAGCGGTTC CACGCGTTTC TCGACGCCTA CGCGCCGGAC
GTCGATCGCG GCGACAATTC GGTGGTGTAC GGCTACGGCG CCGCGCAGAG TCTGGTCGAA
GTCCTGCGCC GCGCTGGTGG CGATCTCAGC CGCGCCAACA TCATGAAGCA GGCCGCCAGC
CTCCAGGACT ACGTGCCCGA CACGCTGCTC CCGGGCATCA CGGTGAACAC CGCGGCGGAC
GACTTCCATC CGATCGAGCA GCTTCGGATG ATGCGGTTCT CCGGCGATCA TTGGGAATTG
TTCGGTCCGG TGATCGGCGG CGAGCTGCGC AACTAA
 
Protein sequence
MSSLSFCRAR RQALLALSAA VLALASPARA ESPAAGPSGG TIRIGNLMPY SGPASAYSIV 
GRIEQAYFKM INDQGGINGR QIEFISYDDG YNPAKAVEQV RKLVERDEVL LVFSAMGTPS
NAAIQKYLNL KQVPQLFAAT GATRFGDPKA FPWTMGWQPP YQTEGRVYAK YILATKPAAR
IAVLYQNDDL GRDLLKGLKD GLGDRAAAMI ALEESYEVTE PSVDNHVARM KASGADVFVS
ITTPKFAAQS IRAAATLDWH PLYVQALVSA SIAAVLRPAG LDAAQGLVSA AYNKDAADPQ
WRDDPGMKRF HAFLDAYAPD VDRGDNSVVY GYGAAQSLVE VLRRAGGDLS RANIMKQAAS
LQDYVPDTLL PGITVNTAAD DFHPIEQLRM MRFSGDHWEL FGPVIGGELR N