| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4242 |
|---|
| Symbol | |
|---|
| ID | 6411926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4555690 |
|---|
| End bp | 4556568 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642714124 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001993213 |
|---|
| Protein GI | 192292608 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGT TTCTGAACCA AATCCTGGCT GGCATCGCCA CCGGTGCGAT CTATGCCTGT
ATGGCGCTCG CCGTGGTGAT GATCTACCAG GCGATCGACC ACCTCAACTT CGCCCAGGGC
GAAATGGCGA TGTTCTCGAC CTTCGTCGCC TGGCAGCTGA TGCAGTGGGG CGTGCCATAT
TGGGGCGCGT TCGTGCTGAC GCTGGCGTTC TCGTTCGCGG GCGGCGTGAT CATCGAGCGG
GCGCTGTTCA AGCCGCTCGG CAACGCGCCG GTGCTGACCC ACGTCGCTGG CTTCATCGCC
CTGTTCGCGA TCATCAACTC GGTCGCGGGC CTGACCTGGG ACTTCACCAT CAAGCAGTTC
CCGTCGCCGT TCGGCTCCTC GCCGTTCCTC GGCAGCCAGT TGATCTCGAC CCATCAGGCC
GGGATGATCG GCGTGACCAT CGTGCTGCTG ATCCTGCTGT TCCTGTTCTT CCAGTACACC
AGGATCGGTC TGGCGATGCG GGCTGCGGCG TCGCAGCCTG AATCGGCACG GCTGGTCGGC
ATCAACACCT CGTGGATGAT CGCGCTCGGC TGGGGCATGG CGGCCGCGAT CGGTTCGATC
GCCGGCATGC TGATCGCTCC GGTGGTGTTC CTCGAGCCCA ATATGATGGG CGGCGTACTG
ATCTACGGGT TTGCCGCAGC GGTGCTCGGC GGTCTGTCCA GTCCGTTCGG CGCAGTGGTC
GGCGGCTTCC TGGTCGGCGT GTTCGAGAAC CTCGCGGGCA CCTACATCCC GGGTGTCGGC
AACGAGCTCA AACTGCCGAT CGCGCTGGCG CTGATCGTCA CCGTTCTTGT CGTGAAACCC
ACTGGCCTGT TCGGCCGCAC CATCGTCAAG CGAGTCTGA
|
|---|
| Protein sequence | MDLFLNQILA GIATGAIYAC MALAVVMIYQ AIDHLNFAQG EMAMFSTFVA WQLMQWGVPY
WGAFVLTLAF SFAGGVIIER ALFKPLGNAP VLTHVAGFIA LFAIINSVAG LTWDFTIKQF
PSPFGSSPFL GSQLISTHQA GMIGVTIVLL ILLFLFFQYT RIGLAMRAAA SQPESARLVG
INTSWMIALG WGMAAAIGSI AGMLIAPVVF LEPNMMGGVL IYGFAAAVLG GLSSPFGAVV
GGFLVGVFEN LAGTYIPGVG NELKLPIALA LIVTVLVVKP TGLFGRTIVK RV
|
|---|
| |