Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4238 |
Symbol | |
ID | 6411922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4551040 |
End bp | 4553139 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642714120 |
Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
Protein accession | YP_001993209 |
Protein GI | 192292604 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.87479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAG TAGTCACACG CGCAACGCAG GATCAGGTCG CGATCGTCAC GGTCGACAGT CCGCCGGTCA ATGCGCTCAG TGCGGCTGTT CGCCGCGGCA TTCTGGAAAA CGTCAACGCC GCCGTTGCCG ATCCCGCGGT GCAGGCGATC GTGCTGGTAT GCGCGGGCCG CACCTTCATT GCCGGTGCCG ATATCACCGA ATTCGGCAAG CCGGCGCAGC CGCCGGCGCT CAACGACGTC ATCGCCGCGC TGGAGAATTC GCCGAAGCCG ACGATTGCTG CGATCCACGG GACCGCGCTC GGCGGTGGCC TCGAAGTCGC GCTCGGTTGC CATTTCCGCG TCGCCGTCAA GGAAGCCAAG CTCGGCCTGC CGGAAGTCAA GCTCGGCCTG CTGCCGGGCG CTGGCGGTAC GCAGCGCCTG CCGCGCGCGG TCGGTCCGGA GCTCGCGGTG CAGATGATCG TCGGCGGCAG CCCGATCGGC GCCGCTGAAG CGCTCAAGCA TGGCCTGGTC GAAGAGATCG TCGAGAATTT GGTCGCGGGC GCGGTGGCGT TCGCCAAGAA GGTGCTGGCC GAGAAGCGCC CGCTGCGCCG GCTGCGCGAC GACGATTCCA AGCTCGCTGC CGCCAAGGCC GATCGCTCGA TCTTCACCAA TGCGGTCGCG GCGATGACCA AGAAGGCGCG CGGCCTCGAA GCGCCGTTCG CCTGCGCCGA CGCGATCGGC GCCGCGATCG ATCTGCCGTT CGAAGAAGGG CTGAAGAAGG AGCGTGAGGG CTTCATGAAG CTCGTCGTCT CCGATCAATC GAAGGCGCAG CGCTACGCGT TCTTCGCCGA GCGTGAAGCC GCCAAGGTCG ATGGCGTGCC GGACGGCACC AAGCCGCGCG CCGTGTCGCG CGTCGCGATC ATCGGTGCCG GTACCATGGG CGGCGGCATC GCGATGTCGT TCGCCAATGC CGGCATCCCG GTGACGCTGA TCGAGACCGG CGAGGAGCAG CTGAAGCGCG GCCTCGGCAT CATGCAGAAG AACTGGGAAG CCACCGCGGC GCGGGGCGGC CTGCCGCCGG ATGCGCCGGC CAAGCGCATG GCGCTGATCA CCGGTGTGGT CGGCCTCGAA AACGTCAAGG ACGCCGACCT GATCATCGAG GCGGTGTTCG AAACCATGGC GGTGAAGAAG GAAGTGTTCA CCGCCATCGA CGCCCACGCC AAGCCGGGCG CGGTGCTGGC GTCGAACACC TCGTATCTGT CGATCGACGA GATCGCCGCC ACCACCAAGC GTCCGCAGGA CGTGCTCGGC ATGCACTTCT TCTCGCCGGC CAACGTGATG AAGCTGTGCG AAATTGTGCG CGGCGCCAAG ACCGCACCGG ACGCGCTGCT GACCGCGGTG TCGATCGCCA AGAAGATCGC CAAGGTGCCG GTCGTGGTCG GCGTCTGCGA CGGCTTCGTC GGCAACCGCA TGCTCGCGGC CCGCTCCAAG CAGTCCGAGA AGCTGCTGTT CGAAGGCGCG CTGCCGCAGC AGGTCGACGC CGTCGTCACC AAGTTCGGCA TGCCGATGGG CCCGTTCGCG ATGGGCGATC TTGCCGGCCT GGATATCGGC TGGCGCTCGC GGAAAGATCG CGGCATCAAG TCGGAGATCG CGGACGCGCT GTGCGAAGCC GGCCGCTTCG GCCAGAAGAC CGGCAAGGGC TACTACAAAT ACGAACAGGG CTCGCGCGCC CCGATGCCCG ATCCGGAAGT CGAGACGCTG ATCAACGACA CGCTCGCCAA GCTCGGCCTC AAGCGCCGCG ACATCACCGA CGAGGAGATC CTCGAGCGGA TGGTGTACCC GATGATCAAC GAGGGCGCCC GCATCCTCGA AGAGAAGATC GCGGCGCGGC CGAGCGACAT CGACGTGGTC TGGCTATACG GCTACGGCTG GCCGATCTAT CGCGGCGGCC CGATGCACTA TGCCGACAGC GTCGGCCTCA AGCACATCGC CGAGCGGCTG TCGGCCTATG CCAAGGCCAC CAACGATCCG TCGCTGGAGC CAGCCCCGCT GCTCGCCCGT CTCGCTGCCG AAGGCAAGAC CTTCGCGTCG CTGACGCAGC CGACCAAGGC CGCGGCGTGA
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Protein sequence | MSEVVTRATQ DQVAIVTVDS PPVNALSAAV RRGILENVNA AVADPAVQAI VLVCAGRTFI AGADITEFGK PAQPPALNDV IAALENSPKP TIAAIHGTAL GGGLEVALGC HFRVAVKEAK LGLPEVKLGL LPGAGGTQRL PRAVGPELAV QMIVGGSPIG AAEALKHGLV EEIVENLVAG AVAFAKKVLA EKRPLRRLRD DDSKLAAAKA DRSIFTNAVA AMTKKARGLE APFACADAIG AAIDLPFEEG LKKEREGFMK LVVSDQSKAQ RYAFFAEREA AKVDGVPDGT KPRAVSRVAI IGAGTMGGGI AMSFANAGIP VTLIETGEEQ LKRGLGIMQK NWEATAARGG LPPDAPAKRM ALITGVVGLE NVKDADLIIE AVFETMAVKK EVFTAIDAHA KPGAVLASNT SYLSIDEIAA TTKRPQDVLG MHFFSPANVM KLCEIVRGAK TAPDALLTAV SIAKKIAKVP VVVGVCDGFV GNRMLAARSK QSEKLLFEGA LPQQVDAVVT KFGMPMGPFA MGDLAGLDIG WRSRKDRGIK SEIADALCEA GRFGQKTGKG YYKYEQGSRA PMPDPEVETL INDTLAKLGL KRRDITDEEI LERMVYPMIN EGARILEEKI AARPSDIDVV WLYGYGWPIY RGGPMHYADS VGLKHIAERL SAYAKATNDP SLEPAPLLAR LAAEGKTFAS LTQPTKAAA
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