Gene Rpal_4238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4238 
Symbol 
ID6411922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4551040 
End bp4553139 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content67% 
IMG OID642714120 
Product3-hydroxyacyl-CoA dehydrogenase NAD-binding 
Protein accessionYP_001993209 
Protein GI192292604 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.87479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAAG TAGTCACACG CGCAACGCAG GATCAGGTCG CGATCGTCAC GGTCGACAGT 
CCGCCGGTCA ATGCGCTCAG TGCGGCTGTT CGCCGCGGCA TTCTGGAAAA CGTCAACGCC
GCCGTTGCCG ATCCCGCGGT GCAGGCGATC GTGCTGGTAT GCGCGGGCCG CACCTTCATT
GCCGGTGCCG ATATCACCGA ATTCGGCAAG CCGGCGCAGC CGCCGGCGCT CAACGACGTC
ATCGCCGCGC TGGAGAATTC GCCGAAGCCG ACGATTGCTG CGATCCACGG GACCGCGCTC
GGCGGTGGCC TCGAAGTCGC GCTCGGTTGC CATTTCCGCG TCGCCGTCAA GGAAGCCAAG
CTCGGCCTGC CGGAAGTCAA GCTCGGCCTG CTGCCGGGCG CTGGCGGTAC GCAGCGCCTG
CCGCGCGCGG TCGGTCCGGA GCTCGCGGTG CAGATGATCG TCGGCGGCAG CCCGATCGGC
GCCGCTGAAG CGCTCAAGCA TGGCCTGGTC GAAGAGATCG TCGAGAATTT GGTCGCGGGC
GCGGTGGCGT TCGCCAAGAA GGTGCTGGCC GAGAAGCGCC CGCTGCGCCG GCTGCGCGAC
GACGATTCCA AGCTCGCTGC CGCCAAGGCC GATCGCTCGA TCTTCACCAA TGCGGTCGCG
GCGATGACCA AGAAGGCGCG CGGCCTCGAA GCGCCGTTCG CCTGCGCCGA CGCGATCGGC
GCCGCGATCG ATCTGCCGTT CGAAGAAGGG CTGAAGAAGG AGCGTGAGGG CTTCATGAAG
CTCGTCGTCT CCGATCAATC GAAGGCGCAG CGCTACGCGT TCTTCGCCGA GCGTGAAGCC
GCCAAGGTCG ATGGCGTGCC GGACGGCACC AAGCCGCGCG CCGTGTCGCG CGTCGCGATC
ATCGGTGCCG GTACCATGGG CGGCGGCATC GCGATGTCGT TCGCCAATGC CGGCATCCCG
GTGACGCTGA TCGAGACCGG CGAGGAGCAG CTGAAGCGCG GCCTCGGCAT CATGCAGAAG
AACTGGGAAG CCACCGCGGC GCGGGGCGGC CTGCCGCCGG ATGCGCCGGC CAAGCGCATG
GCGCTGATCA CCGGTGTGGT CGGCCTCGAA AACGTCAAGG ACGCCGACCT GATCATCGAG
GCGGTGTTCG AAACCATGGC GGTGAAGAAG GAAGTGTTCA CCGCCATCGA CGCCCACGCC
AAGCCGGGCG CGGTGCTGGC GTCGAACACC TCGTATCTGT CGATCGACGA GATCGCCGCC
ACCACCAAGC GTCCGCAGGA CGTGCTCGGC ATGCACTTCT TCTCGCCGGC CAACGTGATG
AAGCTGTGCG AAATTGTGCG CGGCGCCAAG ACCGCACCGG ACGCGCTGCT GACCGCGGTG
TCGATCGCCA AGAAGATCGC CAAGGTGCCG GTCGTGGTCG GCGTCTGCGA CGGCTTCGTC
GGCAACCGCA TGCTCGCGGC CCGCTCCAAG CAGTCCGAGA AGCTGCTGTT CGAAGGCGCG
CTGCCGCAGC AGGTCGACGC CGTCGTCACC AAGTTCGGCA TGCCGATGGG CCCGTTCGCG
ATGGGCGATC TTGCCGGCCT GGATATCGGC TGGCGCTCGC GGAAAGATCG CGGCATCAAG
TCGGAGATCG CGGACGCGCT GTGCGAAGCC GGCCGCTTCG GCCAGAAGAC CGGCAAGGGC
TACTACAAAT ACGAACAGGG CTCGCGCGCC CCGATGCCCG ATCCGGAAGT CGAGACGCTG
ATCAACGACA CGCTCGCCAA GCTCGGCCTC AAGCGCCGCG ACATCACCGA CGAGGAGATC
CTCGAGCGGA TGGTGTACCC GATGATCAAC GAGGGCGCCC GCATCCTCGA AGAGAAGATC
GCGGCGCGGC CGAGCGACAT CGACGTGGTC TGGCTATACG GCTACGGCTG GCCGATCTAT
CGCGGCGGCC CGATGCACTA TGCCGACAGC GTCGGCCTCA AGCACATCGC CGAGCGGCTG
TCGGCCTATG CCAAGGCCAC CAACGATCCG TCGCTGGAGC CAGCCCCGCT GCTCGCCCGT
CTCGCTGCCG AAGGCAAGAC CTTCGCGTCG CTGACGCAGC CGACCAAGGC CGCGGCGTGA
 
Protein sequence
MSEVVTRATQ DQVAIVTVDS PPVNALSAAV RRGILENVNA AVADPAVQAI VLVCAGRTFI 
AGADITEFGK PAQPPALNDV IAALENSPKP TIAAIHGTAL GGGLEVALGC HFRVAVKEAK
LGLPEVKLGL LPGAGGTQRL PRAVGPELAV QMIVGGSPIG AAEALKHGLV EEIVENLVAG
AVAFAKKVLA EKRPLRRLRD DDSKLAAAKA DRSIFTNAVA AMTKKARGLE APFACADAIG
AAIDLPFEEG LKKEREGFMK LVVSDQSKAQ RYAFFAEREA AKVDGVPDGT KPRAVSRVAI
IGAGTMGGGI AMSFANAGIP VTLIETGEEQ LKRGLGIMQK NWEATAARGG LPPDAPAKRM
ALITGVVGLE NVKDADLIIE AVFETMAVKK EVFTAIDAHA KPGAVLASNT SYLSIDEIAA
TTKRPQDVLG MHFFSPANVM KLCEIVRGAK TAPDALLTAV SIAKKIAKVP VVVGVCDGFV
GNRMLAARSK QSEKLLFEGA LPQQVDAVVT KFGMPMGPFA MGDLAGLDIG WRSRKDRGIK
SEIADALCEA GRFGQKTGKG YYKYEQGSRA PMPDPEVETL INDTLAKLGL KRRDITDEEI
LERMVYPMIN EGARILEEKI AARPSDIDVV WLYGYGWPIY RGGPMHYADS VGLKHIAERL
SAYAKATNDP SLEPAPLLAR LAAEGKTFAS LTQPTKAAA