| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4234 |
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| Symbol | |
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| ID | 6411918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4545269 |
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| End bp | 4546411 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714116 |
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| Product | pimeloyl-CoA dehydrogenase, small subunit |
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| Protein accession | YP_001993205 |
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| Protein GI | 192292600 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | [TIGR03203] pimeloyl-CoA dehydrogenase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTG ATTTGTCGGA GGAGCAGCGC CTCCTCAAGG AAAGCGTCGA AGGCCTGCTG
AAGGGCAGTT ACGATTTCGA CAGCCGCAAG AAGTACGCCA AGGAGAAGGG CGGCTGGAGC
CGCGCGGTGT GGGGCAAGTT CGCCGAGCAG GGCCTGCTCG GCCTGCCGTT CTCGGAAGAA
GACGGCGGCT TCGGCGCCGG CGCGGTCGAG ACCATGATCG TCATGGAGGC GCTCGGCCAT
TCGCTGGTGC TCGAACCCTA TCTGCCGACC GTGGTGATCG GCGGCGGCTT CCTGCGCCGT
GCTGGTTCGG CCGCGCAGAA GGCCGCGCAT CTGCCGGGCA TTATCGACGG CTCCAAGACC
TTCGCATTCG CCCAGCTCGA AAAGAACTCG CGCTGGGATC TCGGCGACGT CTCCACCACC
GCCAAGAAGA GCGGCGACGG CTGGGTGATC GACGGCGAGA AGTTCGTGGT GCTGAACGGC
GAAGCCGCCG ACACCCTGAT CGTCACCGCC CGCACCAAGG GCGGCCAGCG TGACCGCACC
GGCGTCGGCG TGTTCCTGGT GCCGGCCGAT GCCAAGGGCA TCACCCGCAA GGGCTATCCG
ACCCAGGACG GGCTGCACGC CGCCGACATC ACCTTCACCG GCGTCCAGGT TGGCGCCGAT
GCGGCGATCG GCGATCCGGA GAACGCGCTC GAGCTGATCG AAGCGGTGGT CGACGACGCC
CGCACCGCGC TGTGCGCCGA AGCGGTCGGC CTGATGGATG AGTCACTCAC CACCACGGTC
GAGTACATCA AGACCCGCAA GCAGTTCGGT GTGCCGATCG GCAGCTTCCA GGTGCTGCAG
CATCGCGCCG CCGACATGTT CGTCGCCACC GAACAGGCCC GCTCGATGGC GATGTTCGCC
ACCATGGCGG CCGAGTTCGA CGACGCCAAG GAACGCGCCG GTGCGATTGC CGCGGCGAAG
GTGCAGATTG GCAAGTCCGG CAAGTTCGTC GGCCAGCAGT CGATCCAGCT CCACGGCGGC
ATCGGCATGA CGATGGAAGC CAAGATCGGC CACTACTTCA AGCGGCTGAC CATGATCGAG
CAGACCTTCG GCGACACCGA TCACCACCTC GCCCGCGTCA GCGCGGGCGG CGGGCTGATC
TGA
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| Protein sequence | MDFDLSEEQR LLKESVEGLL KGSYDFDSRK KYAKEKGGWS RAVWGKFAEQ GLLGLPFSEE
DGGFGAGAVE TMIVMEALGH SLVLEPYLPT VVIGGGFLRR AGSAAQKAAH LPGIIDGSKT
FAFAQLEKNS RWDLGDVSTT AKKSGDGWVI DGEKFVVLNG EAADTLIVTA RTKGGQRDRT
GVGVFLVPAD AKGITRKGYP TQDGLHAADI TFTGVQVGAD AAIGDPENAL ELIEAVVDDA
RTALCAEAVG LMDESLTTTV EYIKTRKQFG VPIGSFQVLQ HRAADMFVAT EQARSMAMFA
TMAAEFDDAK ERAGAIAAAK VQIGKSGKFV GQQSIQLHGG IGMTMEAKIG HYFKRLTMIE
QTFGDTDHHL ARVSAGGGLI
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